Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00743 ATGGCGAAGCCGGTTCAAGTTGAAGTGTGGAATCCTAATGGAAAGTACAGAGTTGTGAGCACCAAGCCTATGCCTGGAACTCGCTGGATCAATCTCTTGATCGAACAAGATTGCCGAGTTGAAATTTGTACCGAGAAGAAGACGATACTCTCGGTGGAGGATATTGTTGCTCTCATCGGCGATAAGTGCGACGGCGTTATTGGACAGTTGACTGAAGATTGGGGAGAGGTGCTGTTTTCTGCATTAAGCAGAGCCGGAGGCAAAGCTTTTAGTAATATGGCTGTTGGTTACAATAATGTAGATGTTAACGCTGCTAATAAGTATGGTATTGCTGTAGGAAACACTCCTGGAGTACTTACAGAAACTACAGCAGAGTTGGCAGCTTCACTTTCTCTTGCAGCTGCAAGAAGGATCGTTGAAGCTGACGAGTTCATGAGGGCAGGCCACTATGATGGATGGCTTCCAAATTTGTTTGTTGGAAACTTGCTGAAAGGCCAGACTGTTGGTGTAGAAGGGTTTAAGATGAACCTGATCTACTTCGATCTTTATCAGTCAACCAGACTCGAAAAGTTTGTTACAGCCTATGGCGAGTTCCTTAAAGCCAACGGTGAGGTTCCTGTGACATGGAGAAGAGCATCATCCATGGATGAGGTGCTTCGAGAGGCTGATGTGATAAGTCTTCATCCAGTACTGGATAAAACCACCTTCCATCTGGTGAACAAAGAAAGTCTTAAAGCCATGAAGAAGGATGCAATTCTCATTAACTGTAGTAGGGGACCCGTGATTGATGAAGCAGCCCTTGTCGAGCATTTAAAAGAGAATCCGATGTTTCGAGTTGGCCTCGATGTCTTCGAGGATGAACCATACATGAAACCTGGGCTTGCTGATATGAAGAATGCGATCATTGTACCTCACATTGCTTCCGCTTCCAAGTGGACTCGTGAAGGAATGGCGACTCTGGCCGCTCTTAATGTTCTGGGAAAAATTAAACAATATCCCGTTTGGGCCGATCCGAACCGAGTAGAACCATTCCTTGATGAGAACGCTCCACCTCCAGCTGCGTCTCCAAGCATTGTGAATGCAAAAGCCTTGGAATTGCCTGTGTCAAAGCTGTGA 1116 45.88 MAKPVQVEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDIVALIGDKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGHYDGWLPNLFVGNLLKGQTVGVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEVPVTWRRASSMDEVLREADVISLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVEHLKENPMFRVGLDVFEDEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKQYPVWADPNRVEPFLDENAPPPAASPSIVNAKALELPVSKL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7418862 7422158 + CmaCh19G007430.1 Cma19g00743 315431

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00743 371 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 120 308 IPR036291 -
Cma19g00743 371 Gene3D - 18 329 - -
Cma19g00743 371 Gene3D - 118 306 - -
Cma19g00743 371 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 130 307 IPR006140 GO:0051287
Cma19g00743 371 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 247 263 IPR029753 -
Cma19g00743 371 PANTHER ZGC:136493 28 334 - -
Cma19g00743 371 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 31 327 IPR006139 GO:0016616|GO:0051287
Cma19g00743 371 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 28 334 - -
Cma19g00743 371 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 16 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00743 K15893 HPR1; glycerate dehydrogenase [EC:1.1.1.29] - csv:101209132 683.33
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01377 Cma19g00743 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00795 Cma-Chr17:6305071 Cma19g00743 Cma-Chr19:7418862 3.04E-29 dispersed
Cma19g00743 Cma-Chr19:7418862 Cma08g00704 Cma-Chr8:4298153 4.99E-29 dispersed
Cma11g01377 Cma-Chr11:9091077 Cma19g00743 Cma-Chr19:7418862 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g171 . . . . . . . . Cmo19g00752 . . . . . . . Cpe15g00597 . . . . . . . . . . . . . . . Cone8ag1289 . . . Csa07g00106 . . . . . . . . . . . . . Cma11g01377 Cma19g00743 . Car19g00572 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010312 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00743 Cma_Chr19 FPKM 0.590107 0.0 42.677082 41.211746 64.048744 67.258842 68.388939 4.300754 3.775795 4.398781