Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00744 ATGTCGAAAGAGGTGACGGAAGAGGGACAGTCCAGCTTAAGAAAGGACTACGTGGACCCACCGCCGGCGCCGCTCATCGACGTCGCCGAACTCACCCTCTGGTCCTTTTACAGAGCTCTAATCGCCGAGTTCATCGCCACTCTCCTCTTCCTCTACGTCACCATCGCCACCGTCATCGGCAACAACAAACAGACCAAAATGTGCGACGGCGTCGGAATCCTCGGCATTGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGAATTTCCGGCGGTCATATCAATCCGGCTGTTACATTCGGGCTGTTTCTGGCGAGGAAGGTGTCGCTGATCAGAGCGGTGGGGTACATGGTGGCGCAGTGCGCCGGAGCCGTCGTCGGCGTCGGATTAGTTAAAGCTTTCATGAAGCATGATTACAACAACAACGGCGGCGGAGCAAACGCCGTTAATTCTGGTTACAGTAGGGGAACAGCTCTCGGCGCTGAGATAATCGGAACGTTTGTTCTTGTTTACACCGTTTTCTCTGCTACTGACCCCAAAAGAAGCGCGCGTGACTCTCACATCCCTGTTTTGGCGCCATTGCCGATCGGCTTCGCCGTGTTCATGGTTCATTTAGCCACCATTCCCATCACCGGCACCGGAATCAACCCGGCTAGAAGCTTCGGCGCCGCCGTGATCTACAACCGTGAAAAACCCTGGAACGACCATTGGATCTTCTGGGTGGGTCCGTTCGTCGGAGCACTGGCAGCGGCGGCGTACCACCAGTACATTCTCCGAGCAGCCGCCATTAAAGCGTTGGGATCATTCCGCAGCAACCCGACCAACTGA 843 56.58 MSKEVTEEGQSSLRKDYVDPPPAPLIDVAELTLWSFYRALIAEFIATLLFLYVTIATVIGNNKQTKMCDGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVGYMVAQCAGAVVGVGLVKAFMKHDYNNNGGGANAVNSGYSRGTALGAEIIGTFVLVYTVFSATDPKRSARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNREKPWNDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7425701 7427079 + CmaCh19G007440.1 Cma19g00744 315432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00744 280 Gene3D Glycerol uptake facilitator protein. 23 280 IPR023271 -
Cma19g00744 280 CDD MIP 38 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 SUPERFAMILY Aquaporin-like 30 264 IPR023271 -
Cma19g00744 280 Pfam Major intrinsic protein 31 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 ProSitePatterns MIP family signature. 98 106 IPR022357 -
Cma19g00744 280 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 PRINTS Major intrinsic protein family signature 80 104 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 PRINTS Major intrinsic protein family signature 117 136 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 PRINTS Major intrinsic protein family signature 166 184 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 PRINTS Major intrinsic protein family signature 202 224 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 PRINTS Major intrinsic protein family signature 242 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma19g00744 280 PANTHER AQUAPORIN PIP-TYPE-RELATED 1 280 - -
Cma19g00744 280 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 280 IPR034294 -
Cma19g00744 280 TIGRFAM MIP: MIP family channel proteins 42 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01375 Cma19g00744 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00744 Cma-Chr19:7425701 Cma03g01240 Cma-Chr3:8202908 5.32E-155 dispersed
Cma11g01375 Cma-Chr11:9078606 Cma19g00744 Cma-Chr19:7425701 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00744 K09872 - csv:101209627 541.191