Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00746 ATGCAAAGCCTGATGGAGAGACTAAGACCCCTTGTGGGTAGTAAAAGCTGGAACTATTGTGTTCTATGGAAATTGAGCCAAGATCAGAGATGTGTTGAATGGATGAACTGCTGTTGTGCTGGGACTGAGAATGGGCAAAATGGTGGAGAAGAACTTGGGTTTCCTGTTTCTCAAGTCATTCCATGTAGGGACACTGCATATCCACACCCAAGAGCCAGTTCTTGTGATCTTCTTGCTCAGCTGCCATGTTCTGTGCCTCTAAATTCTGGGGTTTACATACAGACACTGCTATCAAATGAACCCAAATGGCTACTCTTCTCCAATACCATGGATTCAACCGCACTGGATGAAACAGCGGGAACCAGGGTGTTAATTCCATTTCCATTTGGACTTGTGGAGCTGTTCGTCGCTAAACATGCATCTGAAGATCAGCATGTCATAGATTTTGTAACAATTCAATGCAGCATTTCTGTTGAGCAAGAAGCCATTATTAATTCAAGCAACATGGATACAAGTTTCTCTGTTGATGTAAACGCAACAAACGAAATCCAATCAAAGCCGTTTGTAGCGGATCGGAATGCTGTTCTAAAAGATCCTGAAATTCAATTTGAGGCACCAGGTTCAGCCGCACCAACATTAGAAAACGCCAATGTGGGTTATGATATCTCATTAGACAGAATCCGCCTCTGCAGTTCTCCTATGAATTTCTTGCAACAGTTCAATTATAGCTCAGAAAACAGAAATAAGAATGAAATTTTCAATGAATGCTCACAGGATTCATTCCTTACGGATAAGCAGGGAAACCATTACAAGTTTTCAGCTGAAAATGAGTTCCAAGAGGTGGATACGATGCAAGGGTCCTTAATGAACACATCAAACATTCATGTGCAGTTAAAGGAGAACAGTGAATGCAAAGAGCAGCAAGGGGAGGAAAAAGACTTGGTCAAACATGAAAATGGAAGGTCTGATTCAATCTCTGATTGCAGTGATCAGATCGATGACGAAGATGATGCAATCGCAAAGTACCGCCGGAGGACTGGGCAGGGTCCTCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGAAAGAAACTAAATGAGCGGCTGTATAATCTCCGAGCATTGGTTCCCAAAATTTCTAAGATGGATAAAGCCTCAATACTTGGTGATGCAATTGATTTTGTGAAGGAGTTGCAAAAGCAAGTCAAGGAACTCCAAGATGAACTGGAAGAACATACAGATGATGAAAACGGTAAAACTGTAGTTTCAGGAAACAATGGAAACCAAAATAGTGTCCAACTACCTGAGTTTCTGAGCCAAAATGATAAAGCTCAAAACAGTTACCATATGGGAGTACTGGGAAGTGGAAGTATTTTGAAGCAAAATCATCAGGACACTGAAGGTACTAACAATGACAAGACACAACAGATGGAGCCTCAAGTGGAAGTGGCTCAGATTGATGGGAACGAGTTCTTTGTTAAGGTTTTCTGCGAGAATAAGCGAGGCGGGTTTATGAGGTTAATGGAGGCCTTAAATGCTCTTGGCTTGGAAGTAACAAATGCAAATGTGACCAGCTATAGAGGCCTCGTATCTAATGTTTTCAAAGTTGGGAAGAAGGACAGTGAAATGGTTCAAGCGGATGATGTAAGAGACTCTTTGCTGGAGATAACAAAGTACCCATGCAGAGGGTGGGCAGAAATAGTGAAGGCACCAGAGTGCATTGGAAGCCGCATGGAGCCCAACCCCCACCCCCACCAGCACCAGACCCAGAATCCATTTCAAGACAAAGCTATCATCAATTCACGACTTCATCTCCTTAATGAATAA 1827 42.53 MQSLMERLRPLVGSKSWNYCVLWKLSQDQRCVEWMNCCCAGTENGQNGGEELGFPVSQVIPCRDTAYPHPRASSCDLLAQLPCSVPLNSGVYIQTLLSNEPKWLLFSNTMDSTALDETAGTRVLIPFPFGLVELFVAKHASEDQHVIDFVTIQCSISVEQEAIINSSNMDTSFSVDVNATNEIQSKPFVADRNAVLKDPEIQFEAPGSAAPTLENANVGYDISLDRIRLCSSPMNFLQQFNYSSENRNKNEIFNECSQDSFLTDKQGNHYKFSAENEFQEVDTMQGSLMNTSNIHVQLKENSECKEQQGEEKDLVKHENGRSDSISDCSDQIDDEDDAIAKYRRRTGQGPQSKNLVAERKRRKKLNERLYNLRALVPKISKMDKASILGDAIDFVKELQKQVKELQDELEEHTDDENGKTVVSGNNGNQNSVQLPEFLSQNDKAQNSYHMGVLGSGSILKQNHQDTEGTNNDKTQQMEPQVEVAQIDGNEFFVKVFCENKRGGFMRLMEALNALGLEVTNANVTSYRGLVSNVFKVGKKDSEMVQADDVRDSLLEITKYPCRGWAEIVKAPECIGSRMEPNPHPHQHQTQNPFQDKAIINSRLHLLNE 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7435816 7439472 + CmaCh19G007460.1 Cma19g00746 315434

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00746 608 Pfam Helix-loop-helix DNA-binding domain 356 399 IPR011598 GO:0046983
Cma19g00746 608 MobiDBLite consensus disorder prediction 419 433 - -
Cma19g00746 608 MobiDBLite consensus disorder prediction 408 433 - -
Cma19g00746 608 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 353 412 IPR036638 GO:0046983
Cma19g00746 608 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 87 564 - -
Cma19g00746 608 CDD bHLH_AtAMS_like 352 420 - -
Cma19g00746 608 Gene3D - 343 415 IPR036638 GO:0046983
Cma19g00746 608 Coils Coil 388 415 - -
Cma19g00746 608 MobiDBLite consensus disorder prediction 303 333 - -
Cma19g00746 608 SMART finulus 355 404 IPR011598 GO:0046983
Cma19g00746 608 MobiDBLite consensus disorder prediction 303 328 - -
Cma19g00746 608 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 87 564 - -
Cma19g00746 608 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 4 150 IPR025610 -
Cma19g00746 608 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 349 398 IPR011598 GO:0046983
Cma19g00746 608 CDD ACT_UUR-ACR-like 493 555 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00746 - - - cmos:111435148 1036.56
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01372 Cma19g00746 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00372 Cma-Chr10:1713555 Cma19g00746 Cma-Chr19:7435816 9.23E-22 dispersed
Cma17g00073 Cma-Chr17:358156 Cma19g00746 Cma-Chr19:7435816 2.49E-12 dispersed
Cma19g00746 Cma-Chr19:7435816 Cma14g00762 Cma-Chr14:3798446 1.97E-26 dispersed
Cma04g01734 Cma-Chr4:8718800 Cma19g00746 Cma-Chr19:7435816 3.78E-80 transposed
Cma04g01918 Cma-Chr4:10254016 Cma19g00746 Cma-Chr19:7435816 9.91E-25 transposed
Cma11g01372 Cma-Chr11:9069112 Cma19g00746 Cma-Chr19:7435816 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36914 PF14215 bHLH-MYC_N 9.90E-17 CL0161 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00746 Cma_Chr19 FPKM 0.16298 0.0 0.163174 0.058023 0.310486 0.60453 0.649399 0.0 0.0 0.0