Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00750 ATGTTATCGGAGTTCATGGATTTCTTGAGGGCTTGTTTCCGACCGAGCACCGATCGGTATGTGGCGGGGGATATCAAGGGGCGGCAAGATGGGCTGCTATGGTACAAAGATAGTGGACAACATTTGAATGGTGAGTTTTCAATGTCTGTGGTTCAAGCCAACAATTTGCTTGAAGATCAGAGCCAGATTGAGTCAGGCAGTTTGAGCATACATGAGTCTGGCCCCAGAGGAACATTTGTTGGTGTGTATGATGGCCATGGAGGCCCTGAGACTTCTCGGTATATCTGTGATCATCTCTTCCAGCATCTCAAGAGGTTTACTTCTGAGCAAGATTCAATGTCTGGGGATGTAATACGCAAGGCATTCCAAGCGACAGAAGATGGTTTTCTTTCAATAGTTCAAAGGCAATGGTCAACAAATCCTCAAATTGCAGCTGTTGGTTCATGCTGTCTAGTTGGTGTAATCTGTGATGGGACTCTCTATGTTGCAAATCTAGGTGATTCACGTGCTGTTTTGGGTAGAGTAGTGAAGGCAACGGGCGAGGTTCTAGCCATTCAGTTATCGACAGAGCACAATGTTTCTAATGAGTCGGTGAGGCAAGAGCTGCAATCTTTACACCCTGAAGACTCAAAAATTGTGGTTCTAAAGCATAATGTTTGGCGAGTGAAGGGCATAATACAGATTTCCAGATCCATAGGCGATGTGTACTTGAAAAAAGCCGAGTTCAATAAAGAACCTCTGTATTTAAAGTTTCGAGTTCGGGAGCCCTTTATAAAGCCAATTTTGAGCTCTGAACCAGCCATTTCTGAGACCCAGTTGAAGCCAGATGATCAATTTATTATATTTGCATCAGATGGGTTGTGGGAGCACCTTAGCAACCAGGAAGCAGTCAATATAGTTCATAGCCATTCTCAAAGTGGAAGTGCGAGAAGACTGGTCAGAGCTGCTCTTCAACTAGCTGCAAAGAAAAGAGAAATGAGGTACTCAGATTTGAAGAAGATTGACCGTGGTGTTCGTCGCCATTTCCACGACGACATCACCGTGGTGGTTGTGTTTCTCGATACAAATCTGCTCTTCAAAGCCAGTAACACAAAGAGCTCGAGTGTCTCACTACGAGGGGGTGGAGTCAACCGCCTTCCTAACTCTCTAGCCTCCATCAAAACACCCAAGTAG 1173 45.1 MLSEFMDFLRACFRPSTDRYVAGDIKGRQDGLLWYKDSGQHLNGEFSMSVVQANNLLEDQSQIESGSLSIHESGPRGTFVGVYDGHGGPETSRYICDHLFQHLKRFTSEQDSMSGDVIRKAFQATEDGFLSIVQRQWSTNPQIAAVGSCCLVGVICDGTLYVANLGDSRAVLGRVVKATGEVLAIQLSTEHNVSNESVRQELQSLHPEDSKIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNKEPLYLKFRVREPFIKPILSSEPAISETQLKPDDQFIIFASDGLWEHLSNQEAVNIVHSHSQSGSARRLVRAALQLAAKKREMRYSDLKKIDRGVRRHFHDDITVVVVFLDTNLLFKASNTKSSSVSLRGGGVNRLPNSLASIKTPK 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7473265 7477876 + CmaCh19G007500.1 Cma19g00750 315438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00750 390 Pfam Protein phosphatase 2C 72 320 IPR001932 -
Cma19g00750 390 ProSiteProfiles PPM-type phosphatase domain profile. 45 353 IPR001932 -
Cma19g00750 390 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 380 - -
Cma19g00750 390 ProSitePatterns PPM-type phosphatase domain signature. 79 87 IPR000222 GO:0043169
Cma19g00750 390 Gene3D - 33 364 IPR036457 -
Cma19g00750 390 SUPERFAMILY PP2C-like 50 354 IPR036457 -
Cma19g00750 390 SMART PP2C_4 37 351 IPR001932 -
Cma19g00750 390 CDD PP2Cc 46 353 IPR001932 -
Cma19g00750 390 PANTHER ALPHABET, ISOFORM E-RELATED 5 380 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00269 Cma19g00750 CCT
Cma19g00750 Cma20g00740 CCT
Cma11g01366 Cma19g00750 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00181 Cma-Chr14:756985 Cma19g00750 Cma-Chr19:7473265 7.88E-179 dispersed
Cma16g01252 Cma-Chr16:9468656 Cma19g00750 Cma-Chr19:7473265 0 dispersed
Cma11g01366 Cma-Chr11:9047629 Cma19g00750 Cma-Chr19:7473265 0 wgd
Cma19g00750 Cma-Chr19:7473265 Cma02g00269 Cma-Chr2:1227050 0 wgd
Cma19g00750 Cma-Chr19:7473265 Cma20g00740 Cma-Chr20:3468634 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00750 - K01102 csv:101211601 683.715