Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00752 AATATTTCCAGTCCGTCAGATCCCAGATTACATCTTCTCGCTGCTGTCCACATCTCTTCTCGCACTCGGTTCCTCTATCAGATCAGGAGAAGCGAAAAGCACAGTGATTCAAGTATGGGTATGGAACAAAACAATCATGATGCAGAGGAGGGAACGCTGGAGATTGGCATGGAATATAGAACAGTCTCGGGAGTTGCTGGTCCCTTGGTTATTCTGGACAAAGTCAAGGGACCTAAGTTTCAGGAGATCGTTAATATTCGTCTCGGAGATGGATCAACCAGGCGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTTCAGGTATTTGAAGGGACATCTGGAATTGATAACAAATATACAACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTCTCTTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCTTATTTGGACATTTCTGGGAGTTCTATAAACCCTAGTGAGAGAACTTATCCTGAAGAGATGATTCAGACTGGGATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGACAAAAGATCCCTCTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGCCGTCAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCCAACGATCTTCTCGAGGGTGGTGAAGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACAGCTCAATTTTTCAAACGTGATTTTGAGGAAAATGGTTCTATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGACCCTACAATCGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGCGGGAAGCATGTTCTCGTCATATTGACAGATATGAGTTCTTATGCTGATGCCCTTCGAGAGGTGTCTGCAGCACGAGAGGAAGTACCCGGAAGGCGTGGATACCCTGGTTATATGTATACTGATCTTGCTACAATTTATGAGCGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCGACTCCCGATCTTACCGGCTATATTACCGAGGGACAGATCTACATCGATAGGCAGCTCTACAACAGACAGATATACCCACCAATCAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCAATGAAAGCCGTGGTTGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCTCTCAAGGAGCTTACGATACTCGAAATATTTTCCAATCGCTTGATCTGGCATGGACACTGCTTCGTATTTTCCCTCGCGAACTTCTGCACCGTATACCTGCAAAGACTCTTGATCTGTTTTACAGCAGAGAATCTGCAAATTAA 1581 44.34 NISSPSDPRLHLLAAVHISSRTRFLYQIRRSEKHSDSSMGMEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLFYSRESAN 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7482281 7487337 + CmaCh19G007520.1 Cma19g00752 315440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00752 526 PIRSF V-ATPsynth_beta/V-ATPase_B 49 526 IPR022879 -
Cma19g00752 526 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 185 415 IPR000194 GO:0005524
Cma19g00752 526 CDD ATP-synt_V_A-type_beta_C 425 519 - -
Cma19g00752 526 Hamap V-type ATP synthase beta chain [atpB]. 56 524 IPR022879 -
Cma19g00752 526 PANTHER V-TYPE PROTON ATPASE SUBUNIT B1-RELATED 41 526 - -
Cma19g00752 526 ProSitePatterns ATP synthase alpha and beta subunits signature. 406 415 IPR020003 GO:0005524
Cma19g00752 526 CDD V_A-ATPase_B 130 417 - -
Cma19g00752 526 CDD ATP-synt_V_A-type_beta_N 58 129 - -
Cma19g00752 526 TIGRFAM V-ATPase_V1_B: V-type ATPase, B subunit 58 525 IPR005723 GO:0033180|GO:0046961|GO:1902600
Cma19g00752 526 Pfam ATP synthase alpha/beta family, beta-barrel domain 62 128 IPR004100 GO:0046034|GO:1902600
Cma19g00752 526 Gene3D - 67 526 - -
Cma19g00752 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 421 IPR027417 -
Cma19g00752 526 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 41 526 IPR022879 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01365 Cma19g00752 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02088 Cma-Chr4:14473302 Cma19g00752 Cma-Chr19:7482281 1.84E-28 dispersed
Cma15g00938 Cma-Chr15:4979130 Cma19g00752 Cma-Chr19:7482281 1.87E-28 dispersed
Cma18g00985 Cma-Chr18:8308881 Cma19g00752 Cma-Chr19:7482281 5.75E-28 dispersed
Cma19g00752 Cma-Chr19:7482281 Cma16g00871 Cma-Chr16:5403399 1.69E-25 dispersed
Cma11g01365 Cma-Chr11:9040663 Cma19g00752 Cma-Chr19:7482281 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00752 K02147 - csv:101211838 961.829