Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00757 ATGAACAAGAGGGCCAGATTTGATGATTCCAGCAAGGCAGTGGTTAATTTCTTGAAGCGGGAGGTCGGCGAGATTTCCACTCGCAATTTTGCCAACCGTCTTGGTGCGCTGGAGGATCTCGTGCTCCGACTTGGTCTTCTCAGGAAGTTGGAAAGGCACAAAGGTTGTGTGAACACCGTGAGCTTTAATGCTGCTGGTGACGTTTTAGTGTCAGGCTCTGATGATAGGCGGGTGATTCTCTGGAATTGGGAAGCCGGGCAGGTCGAGATCTCTTTTCAATCTGGTCATAATAACAATGTTTTTCAAGCAAAATTCATGCCTTACACGGATGACCGAAGCATTGTGACTTGTGCTGCGGATGGGCAGGTGAGACATGCTCAGGTTTTGAATGGTGGGCGTGTAGAAACTTCCCTACTTGGCAGTCATCAAGGGCGAGCTCATAAGTTGGCCATTGAGCCTGGGAGCCCTTATATTTTTTATACATGTGGTGAAGATGGATTGGTGCAACGTTTTGATCTAAGAACTGGGGCTGCCGTTGAGCTGTTCACTTGCCAATCAGTTGGCAATAGGGCAGGTTACATGTCAACGGTTCAGCTAAATGCAATTGCTATGGACCCTAGAAATCCAAATCTCGTTGTTGTTGCTGGTTCAGACGAGTATGCACGGTTGTATGATATTCGCAAATGTGGGGGGGAAGGGTCGACGTCGACTGATTCTGGTAAACCTGCAGACTGCTATTGCCCCCCTCACTTGATTGCTGATGAGCAAGTGGGAATAACAGGTCTAGCCTTCTCAGAGCTGAGTGAGCTCCTTGTCTCATACAATGATGAATATATTTATCTTTTCAATAGGGACATGGGTTTGGGTCCAAACCCAAATGCAGTATCTCCAGTATCTCTGAGTAGTGATACAAGTGAAATGGGAGCTGAAAAAGTTGTGAATTGTACTCCACAAGTTTATAAAGGACATAGAAACTGTGAGACAGTTAAAGGCGTCAATTTTTTTGGACCTAAATGCGAGTATGTGATCAGTGGTTCTGATTGTGGCAGAATATTTATATGGAGGAAAAAAGGTGGAGAGCTAATCCGAGTCATGAAAGCCGACGAGGATGTTGTGAACTGCATCGAGCCCCATCCTCACATGACCATGCTTGCTAGTAGCGGAATTGAAAGTGACGTCAAGATATGGACTCCAAATTCCCGCCACAGGGCTACTCTGCCTGAGAAAATTGAACAGAATCCAAAGCCTAGAGGATGGATGCACCGCTTAGCGTTACCGGAGGAGGTGATGATGCAACTGTTTTCACTGCGAAGACGACGGAATTCAAACCCTGTAAGAGGAAGAGAAAACTCTACCCCAAATAGGGATATCTTAGAGTTGATAATGACATTCAGCAATTCCAACAGTGATGGCTCTTCAGATTACAACGCTGGTGATGCTGCTGAAGATTAG 1452 46.01 MNKRARFDDSSKAVVNFLKREVGEISTRNFANRLGALEDLVLRLGLLRKLERHKGCVNTVSFNAAGDVLVSGSDDRRVILWNWEAGQVEISFQSGHNNNVFQAKFMPYTDDRSIVTCAADGQVRHAQVLNGGRVETSLLGSHQGRAHKLAIEPGSPYIFYTCGEDGLVQRFDLRTGAAVELFTCQSVGNRAGYMSTVQLNAIAMDPRNPNLVVVAGSDEYARLYDIRKCGGEGSTSTDSGKPADCYCPPHLIADEQVGITGLAFSELSELLVSYNDEYIYLFNRDMGLGPNPNAVSPVSLSSDTSEMGAEKVVNCTPQVYKGHRNCETVKGVNFFGPKCEYVISGSDCGRIFIWRKKGGELIRVMKADEDVVNCIEPHPHMTMLASSGIESDVKIWTPNSRHRATLPEKIEQNPKPRGWMHRLALPEEVMMQLFSLRRRRNSNPVRGRENSTPNRDILELIMTFSNSNSDGSSDYNAGDAAED 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7510639 7517338 - CmaCh19G007570.1 Cma19g00757 315445

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00757 483 PANTHER WD40/YVTN REPEAT-LIKE-CONTAINING DOMAIN-CONTAINING PROTEIN-RELATED 9 470 - -
Cma19g00757 483 Pfam WD domain, G-beta repeat 47 82 IPR001680 GO:0005515
Cma19g00757 483 Pfam WD domain, G-beta repeat 318 354 IPR001680 GO:0005515
Cma19g00757 483 SUPERFAMILY WD40 repeat-like 42 396 IPR036322 GO:0005515
Cma19g00757 483 Gene3D - 41 399 IPR015943 GO:0005515
Cma19g00757 483 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 82 - -
Cma19g00757 483 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 9 470 IPR045151 -
Cma19g00757 483 SMART WD40_4 43 82 IPR001680 GO:0005515
Cma19g00757 483 SMART WD40_4 183 225 IPR001680 GO:0005515
Cma19g00757 483 SMART WD40_4 132 172 IPR001680 GO:0005515
Cma19g00757 483 SMART WD40_4 313 355 IPR001680 GO:0005515
Cma19g00757 483 SMART WD40_4 85 127 IPR001680 GO:0005515
Cma19g00757 483 SMART WD40_4 358 397 IPR001680 GO:0005515
Cma19g00757 483 SMART WD40_4 245 283 IPR001680 GO:0005515
Cma19g00757 483 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00757 K11804 DCAF8; DDB1- and CUL4-associated factor 8 - csv:101212571 791.956
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00757 Cma-Chr19:7510639 Cma20g00460 Cma-Chr20:2203254 7.25E-157 dispersed
Cma19g00757 Cma-Chr19:7510639 Cma03g00866 Cma-Chr3:6430815 4.11E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g212 . Blo15g00392 Bda06g00470 . Bpe07g00706 . . . Cmo19g00770 . . . . . Sed04g3828 . Cpe15g00612 Bhi05g01673 Tan02g0645 Cmetu01g0918 . Hepe02g0403 . . . . . . . . . . . Cone3ag0974 . . Csa07g00126 . Cme01g01222 . . . . . . . . . . . . Cma19g00757 . Car19g00591 . . . . . . . . . . . . . . . . Lsi11g01221 . Chy01g00657 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002748 1 4 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 2 2 2 3 2 3 2 2 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00757 Cma_Chr19 FPKM 15.153406 17.731489 61.159603 62.061344 23.150087 22.420427 24.080343 88.296661 82.041283 86.634659