Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00763 ATGGATGATATTGGTAGCAAAGACTCCAAATTGAAGATAGAAGAAGAAGAAAACAATGATATCAAAGTCCAAGTATGGAAATACATATTTGGTTTCGTTGAAATGGCAGTGGTAAAATGTGCCATAGAGCTCAAAATTGGCGACACAATCGAAGCCTATGGAGGCCTCATGACACTCACTGAGCTATCATCTTCTCTAAATTGCTCTCCATTGCTTCTACACCGCATCCTACGCTTCCTCGTCCATCGAGGAATTTTCAAAGAAGAACCCACAAAAAGCTACGCTCAAACGCCCATGTCTCGGCTGCTTGCCAGTAGCAGCGGCAGCAGCATGGCGCCATTTCTTCTATTCGAGAGCAACCCAGTGATGCTCGCACCATGGCATGGCCTCAGCACGCGAATTAAAGGCAATGAAGCCATACCATTTGAGGCTGCTCATGGCAAAGATATGTGGAGCTATGCAGCAGCTAACCCAACACTCAATGCAATGTTCAATGATGCTATGGCATGCTCTGCGAGGGTTATGAGTGTGCCTGCATTACTTGAAGATTGTGGAGAGATTTTTGAAGGAGTTGAATGTTTAGTGGATGTGGGTGGAGGAAATGGAACAAGCTTGAGCATGATAGTCAAGGCTTGCCCATGGATTAAAGCCATCAACTTTGATCTTCCACATGTTGTTGCTTCTTCACCACCATCCATCGGTGTACAACATGTTGGTGGCAATATGTTTGATTGCATTCCTAAGGCTGATGCTGCTTTCCTCATGTGGGTTCTACATGACTGGGATGACGAGACATGCATCAAAATTTTGAAGAATTGTAGAGATGCAATCCCAAAAAAGACGGGAAAAGTGATAATTGTAGAAGCAGTTCTCGAAGAAAAAAAAGAAAATAATCTGTCGGATGTGGGATTAATGCTAGACATGGTGATGATGGCTCATACCAACGACGGCAAGGAAAGAACAGCTAAAGAATGGGCTTATGTTCTTCATCAGGCTGGGTTTACTCGACACACCATTACTCCCATTCGAGCTGTTCAATCTGTCATTCAAGCCTTCCCTTGA 1062 44.07 MDDIGSKDSKLKIEEEENNDIKVQVWKYIFGFVEMAVVKCAIELKIGDTIEAYGGLMTLTELSSSLNCSPLLLHRILRFLVHRGIFKEEPTKSYAQTPMSRLLASSSGSSMAPFLLFESNPVMLAPWHGLSTRIKGNEAIPFEAAHGKDMWSYAAANPTLNAMFNDAMACSARVMSVPALLEDCGEIFEGVECLVDVGGGNGTSLSMIVKACPWIKAINFDLPHVVASSPPSIGVQHVGGNMFDCIPKADAAFLMWVLHDWDDETCIKILKNCRDAIPKKTGKVIIVEAVLEEKKENNLSDVGLMLDMVMMAHTNDGKERTAKEWAYVLHQAGFTRHTITPIRAVQSVIQAFP 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7554904 7557366 - CmaCh19G007630.1 Cma19g00763 315451

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00763 353 Gene3D - 8 103 IPR036388 -
Cma19g00763 353 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 353 IPR016461 GO:0008168
Cma19g00763 353 Gene3D Vaccinia Virus protein VP39 105 353 IPR029063 -
Cma19g00763 353 PANTHER O-METHYLTRANSFERASE 11 351 IPR016461 GO:0008168
Cma19g00763 353 PIRSF O-mtase 4 353 IPR016461 GO:0008168
Cma19g00763 353 Pfam Dimerisation domain 37 81 IPR012967 GO:0046983
Cma19g00763 353 SUPERFAMILY Winged helix DNA-binding domain 19 107 IPR036390 -
Cma19g00763 353 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 11 351 - -
Cma19g00763 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 349 IPR029063 -
Cma19g00763 353 Pfam O-methyltransferase domain 131 334 IPR001077 GO:0008171
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00763 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - csv:101218114 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00114 Cma-Chr2:571450 Cma19g00763 Cma-Chr19:7554904 1.29E-97 dispersed
Cma11g01356 Cma-Chr11:8975412 Cma19g00763 Cma-Chr19:7554904 1.96E-158 dispersed
Cma18g01342 Cma-Chr18:10209866 Cma19g00763 Cma-Chr19:7554904 4.81E-62 dispersed
Cma19g00761 Cma-Chr19:7542630 Cma19g00763 Cma-Chr19:7554904 1.37E-157 dispersed
Cma19g00763 Cma-Chr19:7554904 Cma19g00897 Cma-Chr19:8183669 1.90E-77 dispersed
Cma19g00762 Cma-Chr19:7546969 Cma19g00763 Cma-Chr19:7554904 1.46E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00763 Cma_Chr19 FPKM 1.784369 2.119654 1.474841 1.671598 0.0 0.499788 0.560337 0.0 0.0 0.0