Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00776 ATGGCTTTTTATTTTGGTCTTCTCTTCTTTCTCGTCTCTTCCGCCGCTGCTGTTTGTGATCGTTGTATTCATCAATCCAAAACTGCTTATTACTACGATGATACACCTATTCAACATGGGGCATGTGGATATGGCCCTTTGGCATTTGAATTGTCCAATGGGTTTGTGGCTGGCGTTGTGCCTTCCCTTTATAAACAAGGAGCTGGATGTGGCGCCTGTTTCCAGGTAAGGTGCAAGAATAATAGATTTTGCAACACGGCTGGAACTAAAGTGGTTGTTACAGATCAAAACTACGATAACAGATATGATTTTGTCCTTAGTAAGAAAGCATACTCCTCAATGGCTTTAAAGAATAAGACGAAAGAACTTTTGAATCTTGGATCAGTCGACGTGGAATATAAGAGGATACCTTGCACGTACAAAAACAAGAATTTGATGGTACGAGTAGAGGAATGGAGCCAAAAGCCATACTACTTGGCCCTTAAGTTGGTATACCAAGGTGGGCAGACAGAAATAAAGGGCGTAGAAATAGCTGAGGTTGGCTCTGATAATTGGGAATCCATGAAGAGAAACTATGGTGCCATTTGGGATACCAACAAGGTTCTTGAGGGAGCGTTGCAGTTGAAAATAGTTGTAGCTTCAAGGTACAACAATGAGAACATATATTGGGCAACCTACGACCTTCCAGATGATTGGAAGATTGGAGAGATGTATGATACTGGAGTTCAAATCGATGACATTGTCAACCAAAAATGTCCACCAAAGCAATGTGGTGATCTTCCATGGAAGTAA 792 41.41 MAFYFGLLFFLVSSAAAVCDRCIHQSKTAYYYDDTPIQHGACGYGPLAFELSNGFVAGVVPSLYKQGAGCGACFQVRCKNNRFCNTAGTKVVVTDQNYDNRYDFVLSKKAYSSMALKNKTKELLNLGSVDVEYKRIPCTYKNKNLMVRVEEWSQKPYYLALKLVYQGGQTEIKGVEIAEVGSDNWESMKRNYGAIWDTNKVLEGALQLKIVVASRYNNENIYWATYDLPDDWKIGEMYDTGVQIDDIVNQKCPPKQCGDLPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7597168 7598704 + CmaCh19G007760.1 Cma19g00776 315464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00776 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cma19g00776 263 Gene3D - 12 139 IPR036908 -
Cma19g00776 263 SUPERFAMILY Barwin-like endoglucanases 8 142 IPR036908 -
Cma19g00776 263 PANTHER EXPANSIN-LIKE A1-RELATED 7 259 - -
Cma19g00776 263 PANTHER EXPANSIN-B3 7 259 - -
Cma19g00776 263 SUPERFAMILY PHL pollen allergen 143 239 IPR036749 -
Cma19g00776 263 Pfam Expansin C-terminal domain 146 214 IPR007117 -
Cma19g00776 263 Gene3D - 140 244 IPR036749 -
Cma19g00776 263 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cma19g00776 263 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cma19g00776 263 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Cma19g00776 263 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Cma19g00776 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cma19g00776 263 Pfam Lytic transglycolase 59 133 IPR009009 -
Cma19g00776 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 240 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00439 Cma-Chr19:5362161 Cma19g00776 Cma-Chr19:7597168 1.23E-56 dispersed
Cma19g00776 Cma-Chr19:7597168 Cma19g00778 Cma-Chr19:7604276 8.97E-123 dispersed
Cma19g00776 Cma-Chr19:7597168 Cma19g00777 Cma-Chr19:7600390 3.61E-101 tandem
Cma11g01351 Cma-Chr11:8943977 Cma19g00776 Cma-Chr19:7597168 5.35E-106 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00776 - - csv:101209988 438.343