Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00778 ATGGCTTGGTTCCTTAGCTTCTTCTTCTTCTTCCTCGTCTCATCTGCTACTGCCTGTGATCGTTGTATTCATCGATCCAAGGCTACTCATTACTATGGAGATTCACCAACTTCATATGGAGGAGCCTGTGGTTATGGAGACTTGGCATTGGAATTTACCAATGGCTACTTCTCAGCTGCTATCCCTTCTCTTTACAAACAAGGAGCGGGCTGTGGTGCATGTTTTCAGGTGAGATGTAAAGACAAAAGATTATGCAATGGAGCAGGGACGAAAGTGGTATTGACGGATCAAAATTATGATATGAGAGCCGATTTTGTTCTTAGTAGAAAAGCTTTTTCGGCCATGGCTTTAAAAGGAAAAGGTCAAGAACTTTTGAACACTGGAATTGTGGACGTAGAATATAAGAGGATACCTTGTGGATACAAAAACAAAAACTTGGCCGTACGAGTTGAAGAATCAAGTTATAACCCGAACTATTTAGCCATTAAATTGTTGTACCAAGGTGGCCAAACTGAGATAGTGGCTGTTGAGATAGCTAAGGTTGGTTCATACGATTGGGTGAGCTTGAGCCGGAGCTATGGAGCTGTGTGGGATACCAATAAAGTACCGAGGGGAGCACTACAAATGAGGATGGTAGTGACTTCAGGTTACGATGGAAAACGGGTGTGGGCAAAATATGTGCTTCCTATTGATTGGAAAACTGGAGTTATTTACGATACTGGAGTTCAAATCGACGATATTGCTAAAGAGGGTTGCCCGGCATTAGAGTGTGGTGATAGGCCATGGAAATGA 792 42.8 MAWFLSFFFFFLVSSATACDRCIHRSKATHYYGDSPTSYGGACGYGDLALEFTNGYFSAAIPSLYKQGAGCGACFQVRCKDKRLCNGAGTKVVLTDQNYDMRADFVLSRKAFSAMALKGKGQELLNTGIVDVEYKRIPCGYKNKNLAVRVEESSYNPNYLAIKLLYQGGQTEIVAVEIAKVGSYDWVSLSRSYGAVWDTNKVPRGALQMRMVVTSGYDGKRVWAKYVLPIDWKTGVIYDTGVQIDDIAKEGCPALECGDRPWK 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7604276 7605482 + CmaCh19G007780.1 Cma19g00778 315466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00778 263 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cma19g00778 263 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cma19g00778 263 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cma19g00778 263 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cma19g00778 263 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Cma19g00778 263 PANTHER EXPANSIN-LIKE A1-RELATED 5 258 - -
Cma19g00778 263 SUPERFAMILY PHL pollen allergen 144 239 IPR036749 -
Cma19g00778 263 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576|GO:0019953
Cma19g00778 263 PRINTS Major pollen allergen Lol pI signature 116 131 IPR005795 GO:0005576|GO:0019953
Cma19g00778 263 PRINTS Major pollen allergen Lol pI signature 149 164 IPR005795 GO:0005576|GO:0019953
Cma19g00778 263 PRINTS Major pollen allergen Lol pI signature 165 180 IPR005795 GO:0005576|GO:0019953
Cma19g00778 263 PRINTS Major pollen allergen Lol pI signature 216 233 IPR005795 GO:0005576|GO:0019953
Cma19g00778 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
Cma19g00778 263 Gene3D - 12 139 IPR036908 -
Cma19g00778 263 Pfam Lytic transglycolase 60 134 IPR009009 -
Cma19g00778 263 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cma19g00778 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 240 IPR007117 -
Cma19g00778 263 Pfam Expansin C-terminal domain 147 229 IPR007117 -
Cma19g00778 263 PANTHER EXPANSIN-B3 5 258 - -
Cma19g00778 263 Gene3D - 141 244 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00776 Cma-Chr19:7597168 Cma19g00778 Cma-Chr19:7604276 8.97E-123 dispersed
Cma19g00778 Cma-Chr19:7604276 Cma19g00781 Cma-Chr19:7619377 1.07E-114 dispersed
Cma19g00777 Cma-Chr19:7600390 Cma19g00778 Cma-Chr19:7604276 3.64E-110 tandem
Cma19g00778 Cma-Chr19:7604276 Cma19g00779 Cma-Chr19:7606542 1.62E-140 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00778 - - csv:101206821 494.197