Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00779 ATGGCTTGGCTTCTTGCCTCTTTCTTTCTCTTTTTCATATCTTCTGCTACCGCTTGTGATCGTTGTGTTTTTCAATCTAAAGCTAGTCATCTTTATGAATCACCTACTACATATGGGGGAGCATGTGGTTATGGCAACTTGGCGTTGCAGTTCTCTAATGGCTTCTTTGCAGCTGCTGTGCCTTCTCTCTATAAACAAGGAGCTGGTTGTGGTGCTTGCTATCAAGTAAGGTGCAAAAATAGAAGGCTTTGCAACACGGTAGGAACCAAGGTGGTACTCACGGATCAAAATAATGACAATGCAACAGACCTTGTTCTTAGCCAAAGAGCTTTCTTTACCATGGCTCTCAATGGTAAAGGCGCGGATCTTTTGAATCTTGGCGTGGTTGATGTTGAATATAAGAGGGTTCCTTGTGAATATCCAAGTAGAAATTTGTTGGTGCGAGTGGAAGAATCAAGCTACAATCCATTCAAGCTGGCTATTAAGTTCTTCTACCAAGGTGGCCAAACAGACATGATTGCTGTGGACGTAGCTCAAGTTGGAACCTCTGATTGGAGCCATATGAAGAGAAGTTATGGCGCTGTTTGGGAGACAGACAACGTACCCGAAGGCGCATTGCAGTTGAGAATGGTGGTTACTTCAGGATATGATGGGAAATGGGTTTGGGCGAAGTCAGTGCTTCCTGCTAATTGGGGAGTTGGGGCCATCTTCAACACTGGAGTTCAAATCAATGATATTGCCAAAGAGAGTTGCCCTCCATGGCAATGTGGTGATGGCCAATGGAAATAA 789 44.36 MAWLLASFFLFFISSATACDRCVFQSKASHLYESPTTYGGACGYGNLALQFSNGFFAAAVPSLYKQGAGCGACYQVRCKNRRLCNTVGTKVVLTDQNNDNATDLVLSQRAFFTMALNGKGADLLNLGVVDVEYKRVPCEYPSRNLLVRVEESSYNPFKLAIKFFYQGGQTDMIAVDVAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWGVGAIFNTGVQINDIAKESCPPWQCGDGQWK 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7606542 7608989 - CmaCh19G007790.1 Cma19g00779 315467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00779 262 Pfam Lytic transglycolase 58 133 IPR009009 -
Cma19g00779 262 Gene3D - 13 139 IPR036908 -
Cma19g00779 262 SUPERFAMILY PHL pollen allergen 143 238 IPR036749 -
Cma19g00779 262 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576
Cma19g00779 262 PRINTS Expansin/Lol pI family signature 60 78 IPR007118 GO:0005576
Cma19g00779 262 PRINTS Expansin/Lol pI family signature 126 142 IPR007118 GO:0005576
Cma19g00779 262 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Cma19g00779 262 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Cma19g00779 262 SUPERFAMILY Barwin-like endoglucanases 9 141 IPR036908 -
Cma19g00779 262 Pfam Expansin C-terminal domain 147 228 IPR007117 -
Cma19g00779 262 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 143 IPR007112 -
Cma19g00779 262 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 239 IPR007117 -
Cma19g00779 262 PANTHER EXPANSIN-LIKE A1-RELATED 7 257 - -
Cma19g00779 262 PANTHER EXPANSIN-B3 7 257 - -
Cma19g00779 262 Gene3D - 141 244 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00777 Cma-Chr19:7600390 Cma19g00779 Cma-Chr19:7606542 1.18E-109 dispersed
Cma19g00779 Cma-Chr19:7606542 Cma19g00781 Cma-Chr19:7619377 3.53E-112 dispersed
Cma19g00778 Cma-Chr19:7604276 Cma19g00779 Cma-Chr19:7606542 1.62E-140 tandem
Cma19g00779 Cma-Chr19:7606542 Cma19g00780 Cma-Chr19:7610188 1.83E-107 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00779 - - csv:101209628 501.901