Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00780 ATGGCTTGGTTTTTCACTGTTCTTCTTCTCTTTATTGCATCTTTTGCTAATGCTTGTGATCGTTGTATTTTTCAATCCAAGGCTGCTCATTACTACGAGGATGCGCCCACTTCATATGGAGGCGCTTGTGGGTATGGAAATTTGGGGTTGGAGATGTCCCAAGGCTACTTTGCAGCTGCTGTGCCTTCTCTTTTTCGAGAAGGGATGGGTTGTGGTGCATGTTATCAGGTAAGATGCAAGAATGCAACACTATGCAACACAATGGGGACTAAAGTAACTTTGACAGATAAAAATTCTGATAACAGAACAGATTTTGTTCTCAGTAAAAAAGCTTTTACTGCTATGGCTTTAAAAGGCAAATCCCAAGAACTTTTGAAAACTGGAATTGTTGATATGGAATACAAGAGGATACCTTGTGAATACAACAAAAATTTATCCATTCAAGTGGTAGAATGGAGCCACAAACCATACTATTTGGCTATTAAACTCCTCTACCAAGGAGGCCAAACCGACATAACCGCCGTCTATATAGCAGCTCAGGATGGCTCGGGCGAGGGGCGGTACATGAAAAGGAACTATGGACCCATTTGGGAGACCAATAATGTGCCTGGAGGGGCCATTAAGCTAGTGGTGATCGTAGTTTCTGGGTATAACAATGGGAGGGGGATCGTGATAGATTATGCACTGCCTGCTGGTTGGAAAAATGGAGATATTTACGATACTGGAATTCAAATCAAGGATATTGCTTCTGAATATTGCAATCCTTGGCGATGGGGGAGCATGTGGTTATGGCAACGTGGCCTTGCAGTTCTCTATTGGTTTTTTTTAGCTGCTGTGCCTTCCCTTTACAGACAAGGAGCTGGCTGTGGCGCTTGCTATCAGGTGAGATGCAAAAATAGAAGGCTTTGTAACACATTAGGGACTAAAGTGGTGCTGACAGATCAAAACAATGACAATGCAACAGACCTTGTTCTTAGTAAAAGAGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCTGACCTCCTCAATCTTGGCGTTGTTGATGTTGAATACAAGAGGGTGGGTTGTGAATACAAACACAAGAACTTGTTAGTCCAAGTGGAAGAACCAAGTTCTAACCCATATTACCTAGCAATCAAATTCTTATACCAAGGTGGGCAAACAGACATGGTAGCCGTGGACATAGCTGAAGTGGGTACCTCAGGTTGGAGCCATATGAAGAGAAATTATGGAGCTGTTTGGGAAACAAACAACATCCCTGAAGGAGCATTACAATTGAGGATGGTGGTGACTTCAGGCTACGATGGAAAATGGGTTTGGGCAAAATCAGTGCTTCCTGCTGATTGGAAAAGTGGAGGCATTTACGATACTCGAGTTCAAATCAACGACGTTGCTAAAGAGAGTTGCCCGCCATGGCAATGTGGTGATAAGCCATGGAAATGA 1446 43.22 MAWFFTVLLLFIASFANACDRCIFQSKAAHYYEDAPTSYGGACGYGNLGLEMSQGYFAAAVPSLFREGMGCGACYQVRCKNATLCNTMGTKVTLTDKNSDNRTDFVLSKKAFTAMALKGKSQELLKTGIVDMEYKRIPCEYNKNLSIQVVEWSHKPYYLAIKLLYQGGQTDITAVYIAAQDGSGEGRYMKRNYGPIWETNNVPGGAIKLVVIVVSGYNNGRGIVIDYALPAGWKNGDIYDTGIQIKDIASEYCNPWRWGSMWLWQRGLAVLYWFFLAAVPSLYRQGAGCGACYQVRCKNRRLCNTLGTKVVLTDQNNDNATDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKRVGCEYKHKNLLVQVEEPSSNPYYLAIKFLYQGGQTDMVAVDIAEVGTSGWSHMKRNYGAVWETNNIPEGALQLRMVVTSGYDGKWVWAKSVLPADWKSGGIYDTRVQINDVAKESCPPWQCGDKPWK 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7610188 7617089 + CmaCh19G007800.1 Cma19g00780 315468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00780 481 Gene3D - 266 358 IPR036908 -
Cma19g00780 481 Gene3D - 13 140 IPR036908 -
Cma19g00780 481 PANTHER EXPANSIN-B3 274 476 - -
Cma19g00780 481 SUPERFAMILY Barwin-like endoglucanases 8 143 IPR036908 -
Cma19g00780 481 PANTHER EXPANSIN-B3 5 256 - -
Cma19g00780 481 PANTHER EXPANSIN-LIKE A1-RELATED 5 256 - -
Cma19g00780 481 SUPERFAMILY PHL pollen allergen 363 457 IPR036749 -
Cma19g00780 481 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 376 458 IPR007117 -
Cma19g00780 481 PANTHER EXPANSIN-LIKE A1-RELATED 274 476 - -
Cma19g00780 481 SMART dpbb_1 276 352 IPR007112 -
Cma19g00780 481 SMART dpbb_1 58 134 IPR007112 -
Cma19g00780 481 SUPERFAMILY Barwin-like endoglucanases 256 361 IPR036908 -
Cma19g00780 481 Pfam Lytic transglycolase 59 134 IPR009009 -
Cma19g00780 481 Pfam Lytic transglycolase 279 352 IPR009009 -
Cma19g00780 481 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 241 IPR007117 -
Cma19g00780 481 Gene3D - 359 463 IPR036749 -
Cma19g00780 481 Gene3D - 141 246 IPR036749 -
Cma19g00780 481 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 277 362 IPR007112 -
Cma19g00780 481 PRINTS Expansin/Lol pI family signature 127 143 IPR007118 GO:0005576
Cma19g00780 481 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Cma19g00780 481 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Cma19g00780 481 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Cma19g00780 481 PRINTS Expansin/Lol pI family signature 186 200 IPR007118 GO:0005576
Cma19g00780 481 Pfam Expansin C-terminal domain 150 216 IPR007117 -
Cma19g00780 481 Pfam Expansin C-terminal domain 368 447 IPR007117 -
Cma19g00780 481 SUPERFAMILY PHL pollen allergen 150 240 IPR036749 -
Cma19g00780 481 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 40 144 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01352 Cma-Chr11:8947057 Cma19g00780 Cma-Chr19:7610188 2.90E-121 dispersed
Cma19g00779 Cma-Chr19:7606542 Cma19g00780 Cma-Chr19:7610188 1.83E-107 tandem
Cma19g00780 Cma-Chr19:7610188 Cma19g00781 Cma-Chr19:7619377 1.66E-82 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00780 - - csv:101207054 456.832