Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00781 ATGCCTTTCTTCTTCCCCTTTCTTCTCTTCCTCTCCCTCCTCTCCGCCGCCACCGCCTGTGATCGCTGTGTTCATCAAGCCAAAGCAGCCTTCTACCAGGACGATGCCGCCGGAGCATACAGAGGCGCCTGTGGCTATGGCGATCTGACACCGGCGCTCGCAAATGGCTACTTCTCCGCCATCATGCCTCCTCTTTACAAGTACGGCGCTGGCTGTGGCGCCTGTTTTCAAGTACGTTGCAAGAACGACAAAATTTGCACCAAAGAAGGGACCAAAATTGTCGTGACGGATCGAAATGACAACACATACACCGGATTGGTTCTTAGCCAAAAGGCTTTTGGTGAAATGGCTGTGAGTGGGAAAGATGGATTGCTTCTGAGTTATGGAGTTGTGGATGTGGAATTCAAAAGGATTCCTTGTGAATACAAGAACCAAAACTTGCTGGTTAGAGTGGAAGAATGGAGTCAATATCCAAGTTACTTAGCTATTAAATTGCTTTATCAAGGTGGTCAAACGGAAATTGTCGGGATGGATATAGCTCAGGTTGGTTATTCAAATTGGGATTATATGGGTAGGAACTACGGAGCTGTATGGGAGACTAAGAAGCCGTTACCAAAAGGGCCATTGCAGTTGCGGTTCGTAGTGACTTCTGGATACGATGGAAAGTGGATTTGGGCTAAGTATGTGCTTCCTGCTGATTGGAGACCTGGACTCATTTACGATACTGGAGTTCAAATCTACGATATTGCTAAGGAAGGTTGTCCAACAGAGCAATGTGGTGATGGACAGTGGCGACGACGATAA 804 47.39 MPFFFPFLLFLSLLSAATACDRCVHQAKAAFYQDDAAGAYRGACGYGDLTPALANGYFSAIMPPLYKYGAGCGACFQVRCKNDKICTKEGTKIVVTDRNDNTYTGLVLSQKAFGEMAVSGKDGLLLSYGVVDVEFKRIPCEYKNQNLLVRVEEWSQYPSYLAIKLLYQGGQTEIVGMDIAQVGYSNWDYMGRNYGAVWETKKPLPKGPLQLRFVVTSGYDGKWIWAKYVLPADWRPGLIYDTGVQIYDIAKEGCPTEQCGDGQWRRR 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7619377 7620958 + CmaCh19G007810.1 Cma19g00781 315469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00781 267 SUPERFAMILY Barwin-like endoglucanases 9 144 IPR036908 -
Cma19g00781 267 PRINTS Expansin/Lol pI family signature 40 58 IPR007118 GO:0005576
Cma19g00781 267 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Cma19g00781 267 PRINTS Expansin/Lol pI family signature 128 144 IPR007118 GO:0005576
Cma19g00781 267 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Cma19g00781 267 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Cma19g00781 267 SUPERFAMILY PHL pollen allergen 146 241 IPR036749 -
Cma19g00781 267 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 41 145 IPR007112 -
Cma19g00781 267 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 242 IPR007117 -
Cma19g00781 267 Pfam Lytic transglycolase 61 134 IPR009009 -
Cma19g00781 267 Pfam Expansin C-terminal domain 149 231 IPR007117 -
Cma19g00781 267 Gene3D - 12 141 IPR036908 -
Cma19g00781 267 PANTHER EXPANSIN-LIKE A1-RELATED 7 261 - -
Cma19g00781 267 PANTHER EXPANSIN-B3 7 261 - -
Cma19g00781 267 Gene3D - 142 247 IPR036749 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01571 Cma-Chr2:8924208 Cma19g00781 Cma-Chr19:7619377 1.19E-52 dispersed
Cma11g01351 Cma-Chr11:8943977 Cma19g00781 Cma-Chr19:7619377 8.65E-137 dispersed
Cma19g00778 Cma-Chr19:7604276 Cma19g00781 Cma-Chr19:7619377 1.07E-114 dispersed
Cma19g00779 Cma-Chr19:7606542 Cma19g00781 Cma-Chr19:7619377 3.53E-112 dispersed
Cma19g00780 Cma-Chr19:7610188 Cma19g00781 Cma-Chr19:7619377 1.66E-82 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00781 - - csv:101217243 503.056