Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00788 ATGGATTCCTTTGCTGTAAACCCAAGGAAAACACTCCACATTCGCTCAAATAGCTTACCCTCAAAGCCACATCCAATCGTTTCCCAAGTTGAAGAACATTATTGCAGATTGAAGTCCTCTGAGGCCAGTTCTTCAACTTCTTTATGCCACAGACTCAGCAGCCTTCAAGATTTGCATGATTCCATTGAGAATTTACTTCTTCTACCATGCACCCAACAAACTCTTGTTCATGAGACTCATAATAAATGGGCTGATGACTTGCTAGAAGGATCTCTAAGGCTCTTAGATTTGTGTGATATTGCTAAGGATGCATTGTTGCAGACACAAGAATGTAGCCATGAACTTGAATCCGTTTTGCGCAGAAGAAAAAGTGAAACAGTTATCATAAGTGGTGTTCAGAAATGCTTGAATTCTAGGAAGATGATAAAGAAGACAGTCCACAAGGCCTTGAAGGGAATTAAGAGCAGAAATTCTCAAAAAAGTGAAGAAAGCTCAGCAATTGTTAGCTTGTTACAAGAAGTGGAAGCAGTCACATATAGCACTGTTGAGTCAGTATTGTCGTTCATAGCAGGACCAAAGGTGCCATCAAAGATGAGCCGATGGTCTTTGATCTCCAAGCTGGTACAACCCAAAAGGGTTGCCAGCAAAGATGAAGGTGCATATGCAAACGAGGTGGAAATGCTGGATGGCATACTATATTCAATAGCTAGCCACACAATAGATGAATCCTTCAGCTTGCAGGAGTCGCTGAGGAAGTTTGAGTCGAGTATTCAAGAGATGAGCCTGAGATTCCGCATGTCTCCCTCAGCCAATATAAATAGGCCTCTGAGGCCAAAACATGGAAGTCAAGTTGTAACTGCTTTAGCTGTTCTTTTATTGAAGGCCTGTGAAGCCACTTCTTCATCTTCTTCTTTGTGCCAAAAACTTGATGGTCTTCAAGATTTTCATGATTGCATTGATAAGTTGCTTCTTTTGCCGCTCACCCATCAAGCTATTGTTGACAACAAATCAGTTGATGAGTTGCTAGAAGGATCTCTCAAGCTCTTGGATTTGTGTACTATGGCTAAGGATATGATATCACAGATGAAAGAATGTGCACATGAACTCGAGTCATCGTTGCGCCGAAGAAGAGGAGATGACATTGTAGTTGATGTTCAAAAGTATATGAACTCAAGGAAGATGATGAAGAAGGAAATCCACAAGGCCTTGAAGGGAATGGAAAGAACAAGTTCCCAAAAAAGCAATGAAAATTCAGAAATTGTCAGTTTATTAAAAGAGGCAGAAGTGGTCACATATAGCACCATTGAATCCTTGTTGTCCTTTCTAGCTGGACCAAAGTTGCCATCAAAGATGAACAAATGGTCTTTGGTTTCTAAGTTGATGCAATCTAAGAGAGTAGCCTGCAAAGATGGAAACGAAGTAGAGATGGTGGATGCTGCATTAGATTCAATCATCAATCACAAATTTGATATCCTTGTGCAAGGTGAAGATGTGCAGAACTCACTGAAGAAATTGGAGTTGTGTATTCGTGACATCGAAGAAGATCTCGAGAGTCTATATCGACGTCTTATCAAGAACAGAGTCGCTTTTCTAAACATCCTAAATTACTAA 1611 40.47 MDSFAVNPRKTLHIRSNSLPSKPHPIVSQVEEHYCRLKSSEASSSTSLCHRLSSLQDLHDSIENLLLLPCTQQTLVHETHNKWADDLLEGSLRLLDLCDIAKDALLQTQECSHELESVLRRRKSETVIISGVQKCLNSRKMIKKTVHKALKGIKSRNSQKSEESSAIVSLLQEVEAVTYSTVESVLSFIAGPKVPSKMSRWSLISKLVQPKRVASKDEGAYANEVEMLDGILYSIASHTIDESFSLQESLRKFESSIQEMSLRFRMSPSANINRPLRPKHGSQVVTALAVLLLKACEATSSSSSLCQKLDGLQDFHDCIDKLLLLPLTHQAIVDNKSVDELLEGSLKLLDLCTMAKDMISQMKECAHELESSLRRRRGDDIVVDVQKYMNSRKMMKKEIHKALKGMERTSSQKSNENSEIVSLLKEAEVVTYSTIESLLSFLAGPKLPSKMNKWSLVSKLMQSKRVACKDGNEVEMVDAALDSIINHKFDILVQGEDVQNSLKKLELCIRDIEEDLESLYRRLIKNRVAFLNILNY 536
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7652577 7655965 - CmaCh19G007880.1 Cma19g00788 315476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00788 536 PANTHER DUF241 DOMAIN PROTEIN 290 535 - -
Cma19g00788 536 PANTHER BPS1-LIKE PROTEIN 290 535 - -
Cma19g00788 536 Pfam Protein BPS1 308 533 IPR004320 GO:0048364|GO:0048367
Cma19g00788 536 Pfam Protein BPS1 52 260 IPR004320 GO:0048364|GO:0048367
Cma19g00788 536 PANTHER BPS1-LIKE PROTEIN 10 260 - -
Cma19g00788 536 PANTHER DUF241 DOMAIN PROTEIN 10 260 - -
Cma19g00788 536 Coils Coil 502 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00788 - - - csv:116405105 367.851
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01346 Cma-Chr11:8927587 Cma19g00788 Cma-Chr19:7652577 7.99E-149 dispersed
Cma19g00786 Cma-Chr19:7643638 Cma19g00788 Cma-Chr19:7652577 8.47E-105 dispersed
Cma19g00788 Cma-Chr19:7652577 Cma19g00790 Cma-Chr19:7660344 3.51E-69 dispersed
Cma19g00787 Cma-Chr19:7645697 Cma19g00788 Cma-Chr19:7652577 0 tandem
Cma19g00788 Cma-Chr19:7652577 Cma19g00789 Cma-Chr19:7657871 1.27E-62 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g248 . . . . . . . . Cmo19g00803 . . . . . . . . Bhi05g01613 Tan02g0597 Cmetu01g0372 . . . . Cla02g00365 . . Cco02g0379 Clacu02g0365 Cmu02g0362 Cre02g0694 . . . . . Csa07g00165 . Cme01g01168 . . . . . . . . . . . . Cma19g00788 . . . . . . . . . . . . . . . . . . Lsi11g01268 . Chy01g00625 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00788 Cma_Chr19 FPKM 4.310056 4.712416 0.0 0.0 0.0 0.0 0.052905 0.0 0.0 0.0