Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00789 ATGAGAAACTCTCAGCATGTTCGTTCAAAGAGTGTGCCTGAAAATCCAAACCCAATCATCAGCCAAGTAGATGAGCAACTGAGCAGATTAAAGGATTCTGAAGCCCCTTCTTCTCTATGCATCAGACTAGGCGCCCTTCAAGATTTGCACGAGTCCGTGGATAAGCTGCTTCTTTTGCCTCACTCCCAACAAGCTCTGGTTCAAGTGAGTGACAAGGAAGGGCTGGATGACTTACTAGAAGGCTCTCTCAGGCTTCTGGATTTGTGTGACACAGCTAAGAATGCCTTGTTGCAGACAAGGGAATGCATATATGAATTAGAGATGGTTTTGCGTAGAAGGAGAACTGAAATGGGGATTTCTAGTTCAGTTCAGAAGTGTTTAAGTTCCAGGAAGATGATAAAGAAAGCAGTCCATGAAGTGTTGAAAATGGAAAGAAAACAATGTCATAAAGATAATGGAAGTCAGCTAAAAGAGGTTGAAGCAGTCACATACCACAGCATAGTAGCCTTATTGTCCTTCATAGCAGGAGCCAAGTTTCCAGCAAAATGGAGCTGCTGGACTTCAGTTTCCAAGCTTGTTAAATCCAAAAAAGTGGCCTGCATAAGCGAAGAAACAAGCATAAGTGTTGTAGAAAGGTTGGATTTGGCTTTGAGTTCAATTGCCAATTACAGAACTGACAAGGAATTCCAAGTTCAAGTTGAAGATATGCAGAGCTTGCTCAGGGATTGTGGAGCAAGCATTAAGGAAGTTCAAGAAGAGCTTGAGAGTCTTTATAGGTTCATAATCAGAACAAGAATCTCCCTTCTTAACATCTTCAACCACTAA 825 41.82 MRNSQHVRSKSVPENPNPIISQVDEQLSRLKDSEAPSSLCIRLGALQDLHESVDKLLLLPHSQQALVQVSDKEGLDDLLEGSLRLLDLCDTAKNALLQTRECIYELEMVLRRRRTEMGISSSVQKCLSSRKMIKKAVHEVLKMERKQCHKDNGSQLKEVEAVTYHSIVALLSFIAGAKFPAKWSCWTSVSKLVKSKKVACISEETSISVVERLDLALSSIANYRTDKEFQVQVEDMQSLLRDCGASIKEVQEELESLYRFIIRTRISLLNIFNH 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7657871 7658695 - CmaCh19G007890.1 Cma19g00789 315477

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00789 274 Pfam Protein BPS1 43 271 IPR004320 GO:0048364|GO:0048367
Cma19g00789 274 PANTHER BPS1-LIKE PROTEIN 3 273 - -
Cma19g00789 274 PANTHER DUF241 DOMAIN PROTEIN 3 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00789 - - - csv:101212326 392.119
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00789 Cma-Chr19:7657871 Cma20g00725 Cma-Chr20:3372426 6.87E-43 dispersed
Cma19g00788 Cma-Chr19:7652577 Cma19g00789 Cma-Chr19:7657871 1.27E-62 tandem
Cma19g00789 Cma-Chr19:7657871 Cma19g00790 Cma-Chr19:7660344 4.43E-78 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g249 . . . . . . . . Cmo19g00804 . . . . . . . . Bhi05g01612 . . . . . . Cla02g00364 Cam02g0370 . . Clacu02g0364 Cmu02g0361 Cre02g0693 . . . . . Csa07g00167 . Cme01g01167 . . . . . . . . Sed01g0640 . . . Cma19g00789 . . . . Bhi10g01228 Tan05g1071 Cmetu11g0337 . Hepe08g0329 . . . . . . . . . Lsi11g01269 . Chy01g00623 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000131 0 12 1 2 2 1 0 6 0 11 11 12 8 12 12 15 12 2 0 13 11 10 0 12 9 11 7 11 8 6 217
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00789 Cma_Chr19 FPKM 5.58303 7.043528 16.344345 17.386568 0.0 0.0 0.105767 0.0 0.0 0.0