Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00792 ATGGGTGCCGACGGTGATTCCAGCGAGCACCGGGTTCATGGTGACGGTGAAGAAGGGGGAGGTAGTGTTACAGTTAATATTCGATGTTCTAATGGTTCGAAATTTTCGGTGAGGACGAGTCTTGATTCCTCGGTTGGGACATTTAAATCAATTCTTGCTCAGAATTGTGACATTCCAGCTGATCAGCAGCGCTTGATCTACAAGGGTCGCATCTTAAAGGACGATCAAACCTTAGTCAGTTATGGTTTACAGGCAGATCACACTATTCACATGGTTCGAGGTTTCGCCCAAGCTTCAGCACCACCTTCTGCACCTGCTTCGAATGTTAATAGTAGAAGTTCTGACACTGCTCCTGGTGTTACAAGAGGTGTTGGTTCTACTGAGAGTGGTGCTTTTGGAAATGCTGGCCTTGGTGCATCATTATTTCCTGGACTGGGTTTTAATCCTTTTGGCGGGGGTGGAGCTGGACTTCCTGAGTTCGAGCAAGTGCAACAACAGTTGACTCAAAACCCGAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAGAACTTGATGAATAACCCTGACTTGATGCGGACCTTAATTACGAGCAATCCTCAGATGCGGGATATTATTGACAGGAACCCAGAGCTTGCTCATATCCTCAATGACCCTGGTATCCTTCGACAGACATTAGAGGCTGCAAGGAATCCTGAACTCATGAGAGAGATGATGAGAAACACTGACCGAGCTATGAGTAACATTGAATCTTCTCCCGAGGGATTTAACATGCTGAGGCGGATGTATGAAAATGTTCAGGAGCCATTTCTAAATGCAACAACGATGGCTGGAAATTCTGGGAATGACTCGAGTGCAAACCCATTTGCAGCTCTCTTGGCAAACCAAGGGGGTGCACCTGTGAGGAATGAGTCTAATAATTCTTCAACTACAGGATCAGAAACAACAGGAAATGCTGCTCCAAATACAAATCCACTTCCTAATCCCTGGGGAGGAATTCAGACAACAACCACACGGCCTACTCCAGCTGGTGATGCAAGGGCTCCTAGTATCGGAGGATTAGGAGGGGCTGGCCGTACAAATGTGGATCCTCTTGCTGGTGTTGTGCCAGACGCGGCTCAGATGAATCAGTTTCTGCAAAATCCAGCTATTTCACAGATGATGCAAAGCCTGCTCTCCAATCCTCAGTATATGAACCAGATCCTCAATCTGAACCCACAGCTACGGAGCATGGTTGATATGAATCCTCAATTAAGAGAAATGATGCAAAATCCAGAGTTCATTCGCCAGTTAACTAATCCGGAGATGATGCAGCAAATGCTATCAATTCAGCAGTCCCTCCTCTCTACCTTAAATCGACAGCCATCGGTTCAAGACTCTGCTCAATCAGGTGCTGCTACAGGTGTTCCTAGCACTGCTGGATTGGAGATGTTGATGAACCTGTTTGGTGGGCTCGGTGCTGGCGGGTTGGCTGTTTCGAACAATCCCAATGTGCCCCCAGAAGAACTATACGCAACTCAACTTTCACAGCTCCAAGAGATGGGCTTCTTCGACACCCAAGAGAACATCAGAGCTCTACGTGCTACTTCCGGGAACGTTCATGCTGCTGTCGAACGACTGCTGGGAAATCTCGGGCAATCTACAGTCACAAAACAGCAGCTGCACATGCCAGAGAAGAGACACACAGATTTTGCCGCGAAATGCTACGCCGAATCGAGTAAACTTGCCGTTCTAGGAACGCCGGCGAGCGGTGGACGATGCGCGTCATTGTGGCTGAGAGTGACCAAGATCGCTCGCTCCAACTTTGATGTGGACGGGACGCACGGGACTCCAAAGTCACGTGCCTTCCCCGTGCTTCTGCTGCACAGTTCCCTAGGGTTTATGCCAGATTCGGGCAAGAAATACCGTATTTTCGATTCTCTGACCAATCAACTGAATGAGGCTCTACGGCGTCGTTTATTGACTGTTCTGACGTTCTGTAGTTCTGTTTCCTTCGTGCTCCTCATGGAGCAAAAGTTTTTGATTGGAGTTATCCTAATGGTACCAACTTATGGTGTAGAATCATTTGTATCATTGGTGTACCCATCAATAAGTGTTTATCTTGAGATCCTACGCGATTGCTATGAATCCTTTGCAATGTACTGCTTTGGACGATATCTGGTTGCTTGCTTAGGTGGGGAAGAAGGGACGATTGTATTTCTAGAGAGAGAAGGACGTTTAAATACTAAGACACCATTATTAGAACATAGCTCAGAAAAGGGAACAATCAAGCATGTTTTCCCTATGAACCTTTTCTTAAAGCCATGGAAAATTGGTGGATGGGTTTACCATGTTATCAAAATTGGGATCGTCCAATATATGATGATAAAGTCCCTCACTTCTATTTTAGCTGTAGTTCTTGAGAACTTTGGCGTTTATTGTGAAGGAGATTTTAATTTCAAATGCGGGTATCCTTATATGGCAGTGGTTTTAAATTTCAGTCAATCATGGGCATTGTACTGTCTGATTCAGTTCTATGCAGTTACGAAGAAAGAATTGATACATATAAAGCCATTCGCCAAGTTTTTGATGTTTAAATCTATAGTATTTTTGACTTGGTGGCAAGGTGTTGGAATTGCTCTCCTATCTTCCCTCGATTTGTTCAGTTCTGTAGCCCAAGGGTTACAGTTTAAGTCAAGTGTCCAAGATTTCATCATTTGTATCGAGATGGCCATTGCTTCTATGATTCACTTGTATGTATTTTCTGCAAAACCCTATGAACTTATGGGGGACCGTTATCCTGGAAGTGTTTCTGTTCTTGGCGATTATGCATCTGTCGACTGTCCTTTAGATCCAGATGAGGTCAGGGATAGCGAGCGTCCTACAAAGTTACGCCTACCCCAGCCTGACCTCGAAGACCAAGACCCCAAGATGGGCATGACAATCAAAGAGAGTGTCCGAGATGTTTTTGTTGGTGGTGGGGGCTATATTGTGAACGACCTGAAATTCACAGTAAACCAAGCAGTTGAACCTGTGGAAAAAGGAATAACGAAGTTCAATGAAAAACTGCATAAGCTCTCCCAAAACATTAAGAAACGAGACAAGGATAAAAAAAAAACCAAGGATGACAGTTGTATTAAGTCGCCCACACAAAAAGTCATTCGAGGAATCGATGACCCCCTTTTGAATGGGAGCTTCAGTGATAGCACGATCGTTCGGGAAAAGAAGAACCGTCGAAAATCAGGTTATATAAGTGCAGAAAGTGGCGGAGAAAGCAGCAGCGATCAGGGTTATGGTAAGTACCAAGTTGCTGGCCGCCGATGGATCACCAAAGACTAG 3321 45.23 MGADGDSSEHRVHGDGEEGGGSVTVNIRCSNGSKFSVRTSLDSSVGTFKSILAQNCDIPADQQRLIYKGRILKDDQTLVSYGLQADHTIHMVRGFAQASAPPSAPASNVNSRSSDTAPGVTRGVGSTESGAFGNAGLGASLFPGLGFNPFGGGGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMNNPDLMRTLITSNPQMRDIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNSGNDSSANPFAALLANQGGAPVRNESNNSSTTGSETTGNAAPNTNPLPNPWGGIQTTTTRPTPAGDARAPSIGGLGGAGRTNVDPLAGVVPDAAQMNQFLQNPAISQMMQSLLSNPQYMNQILNLNPQLRSMVDMNPQLREMMQNPEFIRQLTNPEMMQQMLSIQQSLLSTLNRQPSVQDSAQSGAATGVPSTAGLEMLMNLFGGLGAGGLAVSNNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATSGNVHAAVERLLGNLGQSTVTKQQLHMPEKRHTDFAAKCYAESSKLAVLGTPASGGRCASLWLRVTKIARSNFDVDGTHGTPKSRAFPVLLLHSSLGFMPDSGKKYRIFDSLTNQLNEALRRRLLTVLTFCSSVSFVLLMEQKFLIGVILMVPTYGVESFVSLVYPSISVYLEILRDCYESFAMYCFGRYLVACLGGEEGTIVFLEREGRLNTKTPLLEHSSEKGTIKHVFPMNLFLKPWKIGGWVYHVIKIGIVQYMMIKSLTSILAVVLENFGVYCEGDFNFKCGYPYMAVVLNFSQSWALYCLIQFYAVTKKELIHIKPFAKFLMFKSIVFLTWWQGVGIALLSSLDLFSSVAQGLQFKSSVQDFIICIEMAIASMIHLYVFSAKPYELMGDRYPGSVSVLGDYASVDCPLDPDEVRDSERPTKLRLPQPDLEDQDPKMGMTIKESVRDVFVGGGGYIVNDLKFTVNQAVEPVEKGITKFNEKLHKLSQNIKKRDKDKKKTKDDSCIKSPTQKVIRGIDDPLLNGSFSDSTIVREKKNRRKSGYISAESGGESSSDQGYGKYQVAGRRWITKD 1106
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7683142 7694534 - CmaCh19G007920.1 Cma19g00792 315480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00792 1106 SMART ubq_7 23 94 IPR000626 GO:0005515
Cma19g00792 1106 Gene3D - 195 252 - -
Cma19g00792 1106 Pfam Ubiquitin family 25 92 IPR000626 GO:0005515
Cma19g00792 1106 MobiDBLite consensus disorder prediction 300 344 - -
Cma19g00792 1106 CDD Ubl_Dsk2p_like 23 95 - -
Cma19g00792 1106 MobiDBLite consensus disorder prediction 1022 1042 - -
Cma19g00792 1106 Pfam Organic solute transporter Ostalpha 670 920 IPR005178 -
Cma19g00792 1106 ProSiteProfiles Ubiquitin domain profile. 23 92 IPR000626 GO:0005515
Cma19g00792 1106 MobiDBLite consensus disorder prediction 944 970 - -
Cma19g00792 1106 MobiDBLite consensus disorder prediction 1 17 - -
Cma19g00792 1106 SUPERFAMILY UBA-like 501 543 IPR009060 GO:0005515
Cma19g00792 1106 MobiDBLite consensus disorder prediction 98 125 - -
Cma19g00792 1106 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 547 - -
Cma19g00792 1106 Gene3D - 487 550 - -
Cma19g00792 1106 MobiDBLite consensus disorder prediction 101 123 - -
Cma19g00792 1106 SMART uba_6 505 543 IPR015940 -
Cma19g00792 1106 CDD UBA_PLICs 505 543 - -
Cma19g00792 1106 Gene3D - 9 107 - -
Cma19g00792 1106 MobiDBLite consensus disorder prediction 1 24 - -
Cma19g00792 1106 MobiDBLite consensus disorder prediction 299 359 - -
Cma19g00792 1106 SMART CBM 200 239 IPR006636 -
Cma19g00792 1106 SMART CBM 370 402 IPR006636 -
Cma19g00792 1106 SMART CBM 406 441 IPR006636 -
Cma19g00792 1106 SMART CBM 148 187 IPR006636 -
Cma19g00792 1106 PANTHER UBIQUILIN 1 547 - -
Cma19g00792 1106 MobiDBLite consensus disorder prediction 1066 1106 - -
Cma19g00792 1106 SUPERFAMILY Ubiquitin-like 13 111 IPR029071 -
Cma19g00792 1106 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 500 544 IPR015940 -
Cma19g00792 1106 Pfam UBA/TS-N domain 505 541 IPR015940 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00792 K04523 UBQLN, DSK2; ubiquilin - csv:101210644 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00148 Cma-Chr6:746776 Cma19g00792 Cma-Chr19:7683142 0 dispersed
Cma12g00862 Cma-Chr12:6412851 Cma19g00792 Cma-Chr19:7683142 1.45E-34 dispersed
Cma12g01331 Cma-Chr12:10136526 Cma19g00792 Cma-Chr19:7683142 5.87E-65 dispersed
Cma12g01332 Cma-Chr12:10138986 Cma19g00792 Cma-Chr19:7683142 3.06E-09 dispersed
Cma15g00622 Cma-Chr15:2931255 Cma19g00792 Cma-Chr19:7683142 3.59E-130 dispersed
Cma16g01271 Cma-Chr16:9682839 Cma19g00792 Cma-Chr19:7683142 0 dispersed
Cma11g01338 Cma-Chr11:8866342 Cma19g00792 Cma-Chr19:7683142 0 transposed
Cma11g01337 Cma-Chr11:8859880 Cma19g00792 Cma-Chr19:7683142 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g281 . . . . . Bpe12g00148 . . Cmo19g00813 Cmo11g01783 . . . . Sed05g2177 Cpe04g00628 Cpe15g00637 Bhi05g01590 Tan02g0585 Cmetu01g0562 . . . . Cla02g00354 Cam02g0363 Cec02g0364 Cco02g0371 Clacu02g0354 Cmu02g0351 . Cone12ag1271 Cone8ag1325 . . . Csa07g00180 . . Blo04g00603 Blo13g00475 . Bda14g00644 . . Bma03g00635 . . . . . Cma19g00792 Car11g01410 Car19g00609 . . . . . . . . . . . . . . . . Lsi11g01279 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00792 Cma_Chr19 FPKM 18.554625 20.741842 17.241842 16.794821 24.097095 24.475039 23.067421 20.408287 18.977442 20.892124