Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00793 ATGAATTCAGATATCAACTCCCTCGCCATTTCCAGTAGTAGCAGCTCTGCCTTGGACCTCGCTATTCCATTTCAACTCGGAATCGTCGAAACTACTTTCGATTCCAAGCGCCGCCATAATCCACGCAAGAAGCGGTCAAGAACTGAAAACGCCTCCACTGCTGTCGTCGGCTCCAAGGCTAAGTATAGAAAGAAGCCGGATCCTACTGCGCCGAAGATCACTCCTCCGTGTAGTGAGTGTGGGAGGAGGTTTTGGTCGGATAAGGCGCTTTTTGGTCATATGAGGTGTCATCCTGAACGACAATGGCGGGGGATTAATCCGCCGGTTAGGTTCCATCGCTCGGTTTCGGTTTCTCCTTTTAGACCTAGAGTTGATTTGGAAGCATCAGCATTTACCGAAGAGGAACAGGACGTCGCTAATTGCTTGTTAGTGCTTGCCGATTGCCCTAGTGCGATCGCTAGGGTTTCCGATTTTCGATTTGAATGCGCGAGTTGTAAGAAAGTGTTTGGATCGCACCAGGCGCTTGGAGGACATAGGGCAAGTCACAAGAATGTGAGAGGCTGTTCCGCCATGGCGAAGAGCGATGAAGAAATAGAAGATGATGCTCTGTTTGGACATTGTGGTCATGATTTGAGCATCAATCTGGAGGATAAAATGTCGATGATTTTAGGAACAGCAGCAGGGCATAAGTGTAGTGTATGTATGAGGGTTTTTGCGAGTGGTCAAGCACTTGGTGGCCATATGAGATGCCATTGGGAGAGAGTGGAGGAGAATGCAGCTACAGAAGAGGGGTTTCTTAACTTGGACTTGAACATGCCTGCCCCTGTTGAAGATGGCTCTTCTTCTTCGTATTCTTCAGGTCTCACTCTGGATCTTAGGTTGGGCCTCTGA 891 48.71 MNSDINSLAISSSSSSALDLAIPFQLGIVETTFDSKRRHNPRKKRSRTENASTAVVGSKAKYRKKPDPTAPKITPPCSECGRRFWSDKALFGHMRCHPERQWRGINPPVRFHRSVSVSPFRPRVDLEASAFTEEEQDVANCLLVLADCPSAIARVSDFRFECASCKKVFGSHQALGGHRASHKNVRGCSAMAKSDEEIEDDALFGHCGHDLSINLEDKMSMILGTAAGHKCSVCMRVFASGQALGGHMRCHWERVEENAATEEGFLNLDLNMPAPVEDGSSSSYSSGLTLDLRLGL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7695770 7696660 + CmaCh19G007930.1 Cma19g00793 315481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00793 296 SUPERFAMILY beta-beta-alpha zinc fingers 228 253 IPR036236 -
Cma19g00793 296 SMART c2h2final6 229 251 IPR013087 -
Cma19g00793 296 SMART c2h2final6 75 97 IPR013087 -
Cma19g00793 296 SMART c2h2final6 160 182 IPR013087 -
Cma19g00793 296 MobiDBLite consensus disorder prediction 33 70 - -
Cma19g00793 296 SUPERFAMILY beta-beta-alpha zinc fingers 76 182 IPR036236 -
Cma19g00793 296 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Cma19g00793 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 251 IPR013087 -
Cma19g00793 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 160 187 IPR013087 -
Cma19g00793 296 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Cma19g00793 296 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 296 - -
Cma19g00793 296 ProSitePatterns Zinc finger C2H2 type domain signature. 162 182 IPR013087 -
Cma19g00793 296 Gene3D Classic Zinc Finger 158 251 - -
Cma19g00793 296 Pfam C2H2-type zinc finger 229 253 - -
Cma19g00793 296 Pfam C2H2-type zinc finger 77 99 - -
Cma19g00793 296 Pfam C2H2-type zinc finger 159 183 - -
Cma19g00793 296 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Cma19g00793 296 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 20 296 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01134 Cma-Chr16:8717433 Cma19g00793 Cma-Chr19:7695770 4.75E-14 dispersed
Cma16g01281 Cma-Chr16:9732860 Cma19g00793 Cma-Chr19:7695770 5.46E-09 dispersed
Cma19g00793 Cma-Chr19:7695770 Cma02g01375 Cma-Chr2:8014199 6.75E-25 dispersed
Cma11g01336 Cma-Chr11:8858458 Cma19g00793 Cma-Chr19:7695770 9.45E-06 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00793 - - cmax:111468261 583.563