Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00798 ATGGGTAAGGTAGTGGAGAGGAAGAAGAGGAAGAAAGGGCGGCCATCGCTGTTGGATCTTCAAAAGCGGAATCTCAAGGAGCAGCAAGAGCAAGAAGAGCAGGAGCAGGAGCAGAAGAAAAAGCATCAGCACCAAACCAAGCGAATCAATTCCTCCACCGCAATTTCCAACCCTAATTACGCTTCTCCAACTCCGCTGCGGCGATCTACTCGCCGGAATCCCAACCCCGACGGCCTCACTCCCGATGAGGTCGCTGATGACCACGAGGATGCCGATTACAACGACCAATTGGCTGAGAACCGCCGCGAGAGGAAACTCAAGCTCGTCGTCAGATTGCACTCCCCGAAATCTCCCGTCAATTCGTCGTCTCTCAATTCCTGTCGTTCCGATTCTAATGCGGACGTGGACGGTAATGCTGCGTCGATTAACAAAAAGCGGAAGATCGATACGATTGGGGAGGGATCTAGGATCCAACACTCCGAGAAGGATGAGAAGTCCATTTCTGCCACAAATCCCTCGGAAACCCTCCAAGGGTCGCATATGGATTCGGCACCCTCGGCGCCTTTACCAGATAAGAAGCTTTTGGTTTTCATCCTCGACAGGCTTCAAAAGAAGGACATCTATGGTGTGTTTTCTGAACCAGTGGACCCCAACGAGCTTCCAGACTACCACGAAATTATAGAGCATCCGATGGATTTTGGGACTGTTCGGGAGAAGCTTACTTCTGGAGCTTATAGCAGCTTGGAACAGTTTGAAAAAGACGTTCTCTTAATCAGTTCGAACGCAATGCAATATAATTCCTCAGATACTATATATTATCGGCAGGCGCGTACCATACAAGAGTTGGCAAAAAAGAGTTTTAAGAACTTGAGACAAGATAGTGATGATAATGAACCAGAACCTAAAGTGGTGAGAAGGGGTAGACCACCGACTAAGAATTTAAAAAAACCATTGGGTAGACCTCCCTTGGAACGTGCTGGTTCGGAGTTTTCCCCAGATGCCACTCTTATTACTGGTGGTGAAAACACAAATCGGTCCAACGATTTGAGGAAAGGACTTCATCATTTTGAAAAGCCTGGTTTAGCTGATTTTTCTGGCAGATTCTCCTTCTCTTCCAATAGTGAAGCTGCATTTAATTTGTTTAACCAGAACAGATTTGATAGAAGCGAGGACATGACAGGTTCTGCACTGAGATTCAATTCAGTAAGACAGGGCAAAAAACCGATCGTCTCCGATGAGAATAGGCGTGACACATATAAGCAATTTCAAGCGGCAACTGCTTTACTGGAGCCCTCTGTGCTGAATACATTTGATAGAGAGAGGAAGGTTTTAATGCCAGTTGGGCTTTTCTTGGAGCATGCTTATGCACGAAGCCTAGCTCGATTTGCTGCAGATCTTGGATCTGTTGCATGGAGAGTTACTTCTAAGAAAATTGAAAGAACTTTACCCGCAGGTTCGAGTTTTGGTCCTGGATGGGTTGTAGAAGATGATACCACACCAAAGAGGGTGTTTCTACCGCAAGCTGAACTCGGTCAAAAGTCGACATTGCATGAAAGTTTGGCTCCTAATGTAAAGCCTCTTGCTCCTGAACAAAAGACCGTTCGATCATCCGACAACTTCGAAGCTGATACGTCGTCTAAGATGCATGATCAGCCTTCTCATGTCCCCAGTTCAGATGGCTATTTACCCTCCAGGCCTCCCGCAGAGTTCTCTGCAGCTTCTTCATCGTCGCCGTCAAGTACTCGACAATCTTCAGAGCCCTGCAGGGGACAGGCGGAAACAGTTGAAGGATTAAATCCCAGTAGTGATTATAATGTATTGGAAAGTAGTATTCCAATCTCGAGGCCTTCGTTACAAAAACACGAGAATCTAACAATCTGCCATGGTATGAATGGATTCAATGGTGCTTATGGCTTTGATCTCTCTGCTCACAGGGGGAAACTAATAGGCGCGTCCGAGCCTGCTGGTGTAAAGCCTCAGTCATCATCTCAAATGCTCGAGATGATCTCGAGGACTAATGCTAATTTCATCCTTCCAGCAATGGCGACCAGACTGAATCTGAAAGAACCAAAATGTCCCGAAAACAATCTTGGTACAACAAACTCTTCCAGTTCATTGCTTAGGTCGGGGAACGAGACTCTTGTCGAAACACCATGGCGGCGGCGGCAGCCGCAGGGGCCATCACCAGCACCAGCCCCAGAAGAAACAGCAGTAACAACAACAACAACACTATACAAACCCGAATCCGTTCCCCCAGACCTGAACGTGAGATTTAAATCTCCAGGATCTCCTCCTAGCTCTAGTAAGGTGGACTCTGCTCACCCTGATTTAGTTTTACAGCTCTGA 2346 47.06 MGKVVERKKRKKGRPSLLDLQKRNLKEQQEQEEQEQEQKKKHQHQTKRINSSTAISNPNYASPTPLRRSTRRNPNPDGLTPDEVADDHEDADYNDQLAENRRERKLKLVVRLHSPKSPVNSSSLNSCRSDSNADVDGNAASINKKRKIDTIGEGSRIQHSEKDEKSISATNPSETLQGSHMDSAPSAPLPDKKLLVFILDRLQKKDIYGVFSEPVDPNELPDYHEIIEHPMDFGTVREKLTSGAYSSLEQFEKDVLLISSNAMQYNSSDTIYYRQARTIQELAKKSFKNLRQDSDDNEPEPKVVRRGRPPTKNLKKPLGRPPLERAGSEFSPDATLITGGENTNRSNDLRKGLHHFEKPGLADFSGRFSFSSNSEAAFNLFNQNRFDRSEDMTGSALRFNSVRQGKKPIVSDENRRDTYKQFQAATALLEPSVLNTFDRERKVLMPVGLFLEHAYARSLARFAADLGSVAWRVTSKKIERTLPAGSSFGPGWVVEDDTTPKRVFLPQAELGQKSTLHESLAPNVKPLAPEQKTVRSSDNFEADTSSKMHDQPSHVPSSDGYLPSRPPAEFSAASSSSPSSTRQSSEPCRGQAETVEGLNPSSDYNVLESSIPISRPSLQKHENLTICHGMNGFNGAYGFDLSAHRGKLIGASEPAGVKPQSSSQMLEMISRTNANFILPAMATRLNLKEPKCPENNLGTTNSSSSLLRSGNETLVETPWRRRQPQGPSPAPAPEETAVTTTTTLYKPESVPPDLNVRFKSPGSPPSSSKVDSAHPDLVLQL 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7712954 7717659 - CmaCh19G007980.1 Cma19g00798 315486

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00798 781 Coils Coil 17 47 - -
Cma19g00798 781 Gene3D - 190 306 IPR036427 GO:0005515
Cma19g00798 781 MobiDBLite consensus disorder prediction 140 168 - -
Cma19g00798 781 ProSiteProfiles Bromodomain profile. 203 273 IPR001487 GO:0005515
Cma19g00798 781 ProSitePatterns Bromodomain signature. 209 265 IPR018359 -
Cma19g00798 781 MobiDBLite consensus disorder prediction 115 138 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 48 76 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 1 16 - -
Cma19g00798 781 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 781 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 514 607 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 289 307 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 289 343 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 689 781 - -
Cma19g00798 781 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 781 - -
Cma19g00798 781 Pfam Bromodomain 198 277 IPR001487 GO:0005515
Cma19g00798 781 MobiDBLite consensus disorder prediction 569 607 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 17 42 - -
Cma19g00798 781 SUPERFAMILY Bromodomain 186 296 IPR036427 GO:0005515
Cma19g00798 781 CDD Bromodomain 191 285 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 693 718 - -
Cma19g00798 781 SMART bromo_6 184 292 IPR001487 GO:0005515
Cma19g00798 781 MobiDBLite consensus disorder prediction 1 187 - -
Cma19g00798 781 MobiDBLite consensus disorder prediction 734 748 - -
Cma19g00798 781 PRINTS Bromodomain signature 206 219 IPR001487 GO:0005515
Cma19g00798 781 PRINTS Bromodomain signature 220 236 IPR001487 GO:0005515
Cma19g00798 781 PRINTS Bromodomain signature 236 254 IPR001487 GO:0005515
Cma19g00798 781 PRINTS Bromodomain signature 254 273 IPR001487 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00798 K22184 BRD9; bromodomain-containing protein 9 - csv:101218234 1110.9
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01333 Cma19g00798 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01124 Cma-Chr1:8248303 Cma19g00798 Cma-Chr19:7712954 4.43E-85 dispersed
Cma09g00958 Cma-Chr9:4822916 Cma19g00798 Cma-Chr19:7712954 6.26E-86 dispersed
Cma19g00798 Cma-Chr19:7712954 Cma11g01486 Cma-Chr11:9779687 5.00E-14 dispersed
Cma01g02019 Cma-Chr1:12917873 Cma19g00798 Cma-Chr19:7712954 2.75E-87 wgd
Cma11g01333 Cma-Chr11:8836654 Cma19g00798 Cma-Chr19:7712954 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00798 Cma_Chr19 FPKM 15.407959 16.899885 15.913292 17.909454 15.004136 14.314154 16.431883 19.085175 16.463085 16.816061