Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00799 ATGGCATCGGCGCAGAACCCAGCGCCGAACGTGGATCTCTTCGATGCCTACTTTCGACGTGCCGATTTGGATCGCGATGGTCGAATTAGTGGCGCTGAAGCGGTTTCCTTCTTTCAAGGCTCTGGATTGCCCAAACCGGTTCTTTTTCAGATTTGGGCGCTTTCAGACCCTAGACAGATTGGCTTCCTTGGTCGGGCGGAGTTTTATAATGCCCTTAGGCTGGTCACCGTAGCACAGAGTAAGAGGGAATTAACTCCTGATATTGTGAAAGCAGCGTTGTTTAGCCCAGCTGCATCCAAAATACCAGCACCACAAATAAATTTCAATACCCAGCCTGCACCTCAGTTCAATTCTACTGCACCAGTATCTACACCTCTGAGTGGCATTGGTGCTCCTACGCCCTCCCAAAGTTCTGGGTTGGAATTACAGGTTCCACGAAACATCACTACGAATGTTCCGCTGGTTTCTTCTAGAGAGAGTCAGTTAGTTAGGCCTCCGTTGGCAACTTCAAATTCTGCTTTCCGTCCAGCGCAGGGATTTTCAGGAGTTGGCACTGTCTCGGGGACACTTCCAACAAATTCAATCATCTCAAATGATTGGGTTAGTGAACGTGCCAGTGGAATTCAGGGGACACCCTCGCAACCTCCGAACAGAGGAGTCAGTCCTGTTGGAATGCAGGTCGGATTTGGCCAATCAAGTGCTGGACTAACAACTTCTCAACCCCAAAGGCCTCAGTCTGCTCCTGGAGTAATGCCTGCTGCATCATCACCTGTGGAGAGTAAAGTGCAAGGTATTACTGGAAATGGGACTGCTTCTGGGTCTTATTTTGGAAGAGATGCCTTTCCTGCAACCCCAGTTTCTTCAAAACAAGATGTCCCTGCTGGCAATAAGACTTCCTCATCAGTCACTGTTCCTGTGTCTTCTGTTACACAACCAATAGTTAGAGCAACTTCCCTTGATTCTTTGCAGAATTCTTCTATGAAACTGCCTCTCGCTAATCAGGCCCTACAGAACGAGCCACATGGGAAGCCCAATCAACAGAGCATATTGCAACCTGCTTCCTCTGGATTATCAACAGGATTGCACAACTCTGTTTCTGGACAGTCTCAGCGCCCTTGGCCTAGAATGACACAGACTGATGTGCAGAAGTATACCAAAGTTTTTGTTGAGGTGGATAAAGATAGAGATGGAAAAATTACCGGTCAAGAAGCACGCAACTTGTTCTTGAGTTGGAGGCTGCCAAGAGAGGTTTTAATGCAAGTGTGGGACTTATCCGATCAAGATAATGATAGCATGCTTTCTGTCAGGGAGTTCTGTATCGCACTTTATTTGTTGGAGCGGCATAGGGAAGGACATGTTCTTCCTGCTATGCTTCCTAGCACCATCATGTTTGATTTTCCCAGCAATGGTCATCCTGTGACTCCAGCTGCATCTAACCATAGCAATGCAGCTTGGAGAACGACAGCTGGTCACCAACAGCACCAAGGGGTTCCTGGGCCTGGTAATCTTCATGGAGCTTCTACAATTGGAGTACGTCCGCCTATACCTTCTGCTGCCCTCCCGGTTGGGGATGAGCCACAGACCAATCAACCTAAATCAAAGGTTCCTGTGCTGGATAAAAATCTTGTTAGTCAACTCAGTACAGAAGAGCAGAACTCCCTCAACTCAAAGTTCCAAGAAGCAGAAGATGCTGAGAAAAAGGCACCTCATTTACTTCCTTATATTAGAAAGTTTCGATGGAAGTTTATGGTTGAAGAACTGGAGAAAGAAATTTTGGACTCTAGACAGAAAATCGAGTATTATCGTACTAAAATGCAGGAACTTATTTTGTACAAGAGCAGATGTGACAATCGGTTGAATGAAATATCTGAAAGAGTGTCTTCAGAGAAACGTGAGGTAGAGTCCCTTGCCAAGAAATATGAAGAGAAATATAAACAATCTGGTGATGTAGCCTCCAGATTAACCGTTGAAGAAGCTACATTCCGTGATATACAGGAAAAGAAGATGGAACTGTATCACACGATTGTAAAGATGGAACAAGATATCAGTGAAGATGGTGTTCTTCAGGCTCGTGCTGATCGTATTCAGTCAGATATTGAAGAGTTGGTGAAAGTTCTCAATGAACGCTGCAAGAGTTATGGTTTGCGTGCAAAACCAATAACTCTGACGGAACTTCCGTTTGGCTGGCAACCTGGAATCCAAGTGGGTGCTGCTGACTGGGATGAAGATTGGGACAAACTCGAAGAGGAAGGTTTCTCTGTTGTCAAGGAGCTCACTCTTGATGTACAAAATGTCATTGCCCCTCCCAAGCAGAAATCTAAGTCAGTACAAAAAGAAAAAGGTTCAGCCGTTGACAGCCAAAACGTTACACCTGCAGAGGATGCTGATACCCAGGAAGGAGGTTCTGCACCAGATGCTGATACCAAGGGAGAGAAACCGCCCTCTATGGATGAAACAGCTGTTGAAAATGGTTCCGCACATGATAATAAAAGTGAAAATGGGTCAGCCAAAAGTGCTCCTAACAGCCCCTTCGCACCCAAAAGATCACCTAGCAGCCCCTTCGCACCCAAAAGTGCACCTAGCAGCCCCTTCGCACCCAAAAGTGCTCCTAGCAGCCCCTTTGCAAGTAGTGTTATTGGAAGTCCCAAGGAATATATGGATTCCAGTTTTGGAAAGGCTGCTGGCTTTGATGCTTCCCCCCATGCTAAGGACGCTTTAAGTGACCATGGAGGTGCAGGATCTGTGTTTTCTGGTGACAAGAGCTACGACGAACCAGCTTGGGGAGCATTTGATGCAAACGATGATATTGACTCTGTTTGGGGCTTTAACGCAGGAGGTTCCACCAAGGCCGACAATGATGTAACCCGGGACAGCTACTTTTTCGATTCTGGGGATTTCGGCTTGAATCCTATTAGAACAGATCCATTCCAGGCTAAGAGAAGCACATTTGCTTTTGACGAGTCTGTTCCTAGCACCCCACTCGTCAACTCAGGAAATTCACCACATAATTACCATGATGGATCGGAACCAAGCTTTGACAGCTTCTCAAGGTTCGATTCTTCCAGCGTGCATAACAGTGGTTTTTTCCCTCCTAAGGACACATTTACACGGTTCGATTCGATGCGCAGCAGTAGAGATTTCGACCAGGGTCCTGGATTCTCATCATTCAGTCAATTCGATACAACGCATAGCAACAGAGACTTCGATCAGGGAGGATCCTCAGCACTGACACGATTCGATTCAATGCGCAGCAGTAAGGACTTCGATCAGGGATCCCCTTCACTGTCACGATTTGATTCAATGCGTAGCAGCAAGGACTTCGACCAGGGATTCCCTTCATTGGCAAGATTCGATTCAATGCGCAGCAGCAAAGACTTCGATCAAGGTCATGGATTCCCATCATTCGATGATCCAGACCCGTTTGGATCGACAGGGCCATTTAGAGCGTCCATGGATAATCAAACTCCAAAGAAAGGATCAGATAATTGGAGTGCCTTTTAG 3501 46.56 MASAQNPAPNVDLFDAYFRRADLDRDGRISGAEAVSFFQGSGLPKPVLFQIWALSDPRQIGFLGRAEFYNALRLVTVAQSKRELTPDIVKAALFSPAASKIPAPQINFNTQPAPQFNSTAPVSTPLSGIGAPTPSQSSGLELQVPRNITTNVPLVSSRESQLVRPPLATSNSAFRPAQGFSGVGTVSGTLPTNSIISNDWVSERASGIQGTPSQPPNRGVSPVGMQVGFGQSSAGLTTSQPQRPQSAPGVMPAASSPVESKVQGITGNGTASGSYFGRDAFPATPVSSKQDVPAGNKTSSSVTVPVSSVTQPIVRATSLDSLQNSSMKLPLANQALQNEPHGKPNQQSILQPASSGLSTGLHNSVSGQSQRPWPRMTQTDVQKYTKVFVEVDKDRDGKITGQEARNLFLSWRLPREVLMQVWDLSDQDNDSMLSVREFCIALYLLERHREGHVLPAMLPSTIMFDFPSNGHPVTPAASNHSNAAWRTTAGHQQHQGVPGPGNLHGASTIGVRPPIPSAALPVGDEPQTNQPKSKVPVLDKNLVSQLSTEEQNSLNSKFQEAEDAEKKAPHLLPYIRKFRWKFMVEELEKEILDSRQKIEYYRTKMQELILYKSRCDNRLNEISERVSSEKREVESLAKKYEEKYKQSGDVASRLTVEEATFRDIQEKKMELYHTIVKMEQDISEDGVLQARADRIQSDIEELVKVLNERCKSYGLRAKPITLTELPFGWQPGIQVGAADWDEDWDKLEEEGFSVVKELTLDVQNVIAPPKQKSKSVQKEKGSAVDSQNVTPAEDADTQEGGSAPDADTKGEKPPSMDETAVENGSAHDNKSENGSAKSAPNSPFAPKRSPSSPFAPKSAPSSPFAPKSAPSSPFASSVIGSPKEYMDSSFGKAAGFDASPHAKDALSDHGGAGSVFSGDKSYDEPAWGAFDANDDIDSVWGFNAGGSTKADNDVTRDSYFFDSGDFGLNPIRTDPFQAKRSTFAFDESVPSTPLVNSGNSPHNYHDGSEPSFDSFSRFDSSSVHNSGFFPPKDTFTRFDSMRSSRDFDQGPGFSSFSQFDTTHSNRDFDQGGSSALTRFDSMRSSKDFDQGSPSLSRFDSMRSSKDFDQGFPSLARFDSMRSSKDFDQGHGFPSFDDPDPFGSTGPFRASMDNQTPKKGSDNWSAF 1166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7720970 7729382 + CmaCh19G007990.1 Cma19g00799 315487

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00799 1166 MobiDBLite consensus disorder prediction 119 139 - -
Cma19g00799 1166 Coils Coil 619 646 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 1147 1166 - -
Cma19g00799 1166 SUPERFAMILY EF-hand 10 93 IPR011992 -
Cma19g00799 1166 ProSiteProfiles EH domain profile. 380 463 IPR000261 GO:0005515
Cma19g00799 1166 MobiDBLite consensus disorder prediction 989 1009 - -
Cma19g00799 1166 SUPERFAMILY EF-hand 369 463 IPR011992 -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 289 306 - -
Cma19g00799 1166 CDD Prefoldin 584 704 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 1047 1100 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 1040 1105 - -
Cma19g00799 1166 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Cma19g00799 1166 CDD EH 14 80 IPR000261 GO:0005515
Cma19g00799 1166 MobiDBLite consensus disorder prediction 205 273 - -
Cma19g00799 1166 Coils Coil 584 604 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 337 375 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 285 306 - -
Cma19g00799 1166 ProSiteProfiles EH domain profile. 10 100 IPR000261 GO:0005515
Cma19g00799 1166 MobiDBLite consensus disorder prediction 864 878 - -
Cma19g00799 1166 Gene3D - 9 104 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 259 273 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 770 918 - -
Cma19g00799 1166 ProSiteProfiles EF-hand calcium-binding domain profile. 416 448 IPR002048 GO:0005509
Cma19g00799 1166 ProSiteProfiles EF-hand calcium-binding domain profile. 379 414 IPR002048 GO:0005509
Cma19g00799 1166 SMART eh_3 2 98 IPR000261 GO:0005515
Cma19g00799 1166 SMART eh_3 372 468 IPR000261 GO:0005515
Cma19g00799 1166 MobiDBLite consensus disorder prediction 780 795 - -
Cma19g00799 1166 Pfam Cytoskeletal-regulatory complex EF hand 374 445 IPR000261 GO:0005515
Cma19g00799 1166 Pfam EF hand 15 31 IPR002048 GO:0005509
Cma19g00799 1166 Gene3D - 358 463 - -
Cma19g00799 1166 SMART efh_1 13 41 IPR002048 GO:0005509
Cma19g00799 1166 SMART efh_1 383 411 IPR002048 GO:0005509
Cma19g00799 1166 SMART efh_1 417 445 IPR002048 GO:0005509
Cma19g00799 1166 PANTHER EH DOMAIN 1094 1166 - -
Cma19g00799 1166 PANTHER EH DOMAIN 9 1060 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 1122 1166 - -
Cma19g00799 1166 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 1094 1166 - -
Cma19g00799 1166 PANTHER CALCIUM-BINDING EF HAND FAMILY PROTEIN 9 1060 - -
Cma19g00799 1166 MobiDBLite consensus disorder prediction 826 845 - -
Cma19g00799 1166 CDD EH 384 450 IPR000261 GO:0005515
Cma19g00799 1166 MobiDBLite consensus disorder prediction 205 246 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00799 K12472 EPS15; epidermal growth factor receptor substrate 15 - csv:101215882 1865.12
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01331 Cma19g00799 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00910 Cma-Chr16:6805758 Cma19g00799 Cma-Chr19:7720970 7.49E-14 dispersed
Cma18g00584 Cma-Chr18:3993315 Cma19g00799 Cma-Chr19:7720970 2.95E-13 dispersed
Cma01g02025 Cma-Chr1:12926790 Cma19g00799 Cma-Chr19:7720970 1.81E-06 wgd
Cma11g01331 Cma-Chr11:8820271 Cma19g00799 Cma-Chr19:7720970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g298 . . . . . . . . Cmo19g00819 Cmo11g01788 . . . . Sed05g2162 Cpe04g00633 Cpe15g00643 Bhi05g01580 Tan02g0572 Cmetu01g1669 Lac12g0474 . . . Cla02g00345 Cam02g0354 Cec02g0355 Cco02g0361 Clacu02g0346 Cmu02g0343 Cre02g0675 Cone12ag1298 Cone8ag1333 . . . Csa07g00188 . Cme01g01145 Blo04g00607 Blo13g00472 . Bda14g00649 Bpe15g00782 . Bma03g00639 Bma08g00716 . . . Cma11g01331 Cma19g00799 Car11g01415 Car19g00615 . . . . . . . . . . . . . . . . Lsi11g01287 . Chy01g00592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004902 2 2 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00799 Cma_Chr19 FPKM 26.377792 29.401911 23.323448 24.903599 23.08898 24.644892 22.443596 25.836227 24.060822 24.72834