Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00801 ATGGCGAATTTATTCTGCGATTTCCGCTTCCTACTTCTGATTGCAGCTGTGGTGTTCATCTACATCCAGGTTGAATCAGAGAATCATTGTACCGGTCAAATGCGATTACTAATTGATCAGATAAGCATGCAACAAGGACAAATAGTGGCTTTTGAAGATGAAAGGAAACGCCACTTTGAAGAACGCCTCCAGATGAAGACTCTCCTTCAAGATCTTGAAAGTCAGAAAACCCATTCTGCGATATTTATGTCTTTTATGGATGTGGCTCATGTCATATGTCTGAATTTTAGGATCAAATCGACATTTGCTCATAAGTATTATCTTGTAGGCTCTTTGATTGTTTTTCTCTTTCTAAAATCTGTAGGGAAAGGTCTGCAGCAACTCACAGACAAAACACAGGTGCCTGTGGCAGCTGTTGTAATTATGGCATGCAATCGTGCAGATTATCTGGACAAGACTATTAAGTCTGTTCTAAAATATCAAACACCTGTTGCTTCAAAATATCCTGTTTTTGTTTCCCAGGATGGTTCAAACCCAGATGTAAAAAAAAAGGCTCTTAGCTTTGATCGGCTGGCCTATATGCAGCATTTAGATTATGGAGAAGTGGAAACTGAAAGGCCAGGGGAGTTGATTGCATATTACAAAATTGCACATGATATGGAAATTGCTCCGGATTTTTTCAGTTACTTTGAGGCTGCTGCAATGCTACTTGATAAGGATAAGACCATAATGGCCGTCTCTTCATGGAATGACAATGGACAAAAGCAGTTTGTGCATGATCCTTGTAATCTTTCTGAATGCCTGGATCCTTTGCAGGGTTCCAGTATGGGTCAATTTTTCAAGCAATACCTTGAGCCAATCAAGTTGAACGACGTTCAAATCGACTGGATGTCTATGGATTTGGGCTACCTGATGGAGGACAAATACGTGAAGCACTTTGCAGATGCTGTTAAAAAAGCAAAACCGGTTTATGGAAATGATGCAGTTATGAAGGCTTTTAATGTTGCGGGTGATGTTCGAATTGAGTACCGAGACCAATCAGACTTTGAACACATTGCTCGTCAGTTTGGAGCTGCAATGGCGTCCCTTCCCTCACTGAATCAGAACGAGAAGAAGAAGAAGAAGAATGAAAAGAATCACAAGCTTTCCGACCTCAAAACCCTAGGACTCCAACTTCTCTCCTCTCAAGCTCACATCAACAACCTCCCTCTGCTTCTCACCTTCGTTTCTCCTTCTAAACCTCCTCAATATGTCCTCGAAGCCCTTCTCTCCCTCCAGTCCTTTTTCATCACGGTCCTCCCCTCCCTCCCTTCCTCCTCCAAGCCTGCCGCCGATGTTCAGGACGACGCCGAGTTGATTTACCGGACCTGGCTACGTTCCAAGTTCGATGAACTCGTTAAGTCGCTCATCGATGTTGCGGTCTCTTCTGAATGCGACGATACTCTCAAGGAAATTGTGTTGGATGCGATTATGGAGTTTGTTAAAGTTGGTAACAGGGGAAAATTCCACTCTGCTGTATATCACAGGTTTCTACAGAGTATTGCTCATTCTTCGGCTCCAGTTAATACTCTGATAGCCTTGCTTGTCAAGAAGTACTTCAATCACCTCGATGTCCGTTATTTTACATATATTAGCATCGAAAAACTCACGAGGACTTTTGAGGCTGAGTACATGTCTGGTGATAGAAGTGTGAGGATTAATGGCGATGATGGTGATCATTCAAGAGAAGGAGTGGAGTTCATACACATTGTGCACTCTATCATATCCTCCATTCCCCCTTTAGAAAACTCAAATCAATCTGACTACACTATGTGGGTTGAATCAGGTGATGACAAAGTGCTCTCTGACAATCAAGAAGCAAAGCAGCTAAAGATGAGGAAAAATGATGAAGAGGTTCTTGTAATTCTTGATCAGGAAGTCATTCCTTATCTTTCTAATCCAATCATATTATGTGACTTCTTAACAAAATCCTATGATATGGGTGGTGTTGTCAGTGTTATGGCTCTTAGCAGCCTCTTCCTCCTTATGACAAAATATGGTTTAGAGTATCCAAACTTCTATGAAAAACTATATGCTCTTTTGGTTCCTTCAATATTCATGGCAAAACATCGGGCCAAGTTTTTTCAGCTTCTTGATTCCTGCTTGAAGTCACCACTTCTTCCAGCATACTTGGCTGCCGCTTTTGCTAAGAAATTGAGTAGGCTATCACTTGTTGTTCCTCCATCAGGAGCACTTATCATTATAGCTCTTATTCACAATCTCTTGCGAAGACATCCCTCAATCAACTGTTTGGTTCACCGGGAAAATGTTAGCGAGAGTAAGAATGACGATTCAACAAGTAAAGAGGTTGCTAAAGGCACGGATGCTTCAGAAGTTGAAGCTGATACACTCAACATGAAACCAGGCATTGACCGTTTTAACTACGAGGAAACTGATCCCATAAAATCTAGTGCCTTGAGAAGTTCACTTTGGGAAATTGATTGCCTCCGACACCATTATTGTCCTCCCGTTTCTAGGTTAGTTTTGTCGCTTGAGAATGATCTGACTGTGAGGTCGAAAACAACTGAAATTGATGTTAAAGATTTCGTTGCTGGTTCATACGCGACAATACTCGGGCAAGAGTTGAAAAAGAAAATGAAGCGAGTCCCTCTGGCATTCTACCAAGCAATCCCCACCTCCTTATTCTCAGAGTCTGATTTCCCTGGATGGAGTTTCAATCACGAACACAGTGAGAAGAATATCGATGACTTTGAATTGGATTCCAATATTGCCGGCCATGGAAGAGAAAAGAGAACTCAGGTGTCCTTTTTCCCTATGAACTTCAAAGAGAAACGACAGAAAATGGGAATGTTTTTTCCAGTTCCTTCCATCCCTTTCAGAAGAAAGGTCACCATTGCTTCAATGGAGCTGGCAAATCCTGTTGGGACCTTTGGGATTGGATATGGCAGAATTTCCGAAGGGGCCTCAAGAACTGAAGTAGTGAAAGTTGGAGCTATATTTTCACTTAGTTCTGTTAATGGAAAAGTGTCCAAGATTGCCATTGAGGCTGCTGAGAAAGATGTGAATTCTGATCCAAGTGTTCTTGGTGGAAGAAAGCTATCTATATCCATACATGATGCAAATTACAGTGGATTTCTTGGTATCACAGGAGCAATGAAGTACATGGTAGCTGACACGGTTGCTATCCTTGGTCCACAAGATGCTACTATGGGACATATACTTTCACATCTTTCAAATGAACTCCATGTCCCACTACTATCATTTACAGCATTGGATCCAACACTTTCAACTTTGCAATATCCATACTTCATTCAAACAGCTCCAAATGATCAGTTCCAGATGACTGCAATAGCAGACATGATTAGTTATCACGGTTGGCACGACGTCGTCGTGGTATTCACCGACGATGATCAATGTCGAAACAGTATGTTCGCATTAGGCGACAAAATAGAAGAAAAAGGCTTGAAAATACCCTCTAAAGTGGCACTTCCCCCTTACCCAACAGCCACAAGAACTGAAGTTCACAACGTGCTCGTAAATATTAAAATGATGGAATCTCGAGTTATTGTATTATATACGTTCTCAAAAACAGGTTTCTTGGTTTTCGAAATGGCTAAAAGCCTTGGAATGATGGAGGCTGGATATGTTTGGATAACCTCTAGTTGGCTATCAACAGTTATAGATTCTACTTCACCCCTTCCCTTGAAAACGGCTAACTCCATACAAGGTGTTCTTACGCTTCGGCTACATACACCCGAGTCGAAAAGGAAGCGGTCGTTTATATCTCGTTGGAACGAGCTGAGTAATGGCTCGATTGGGTTGAATACTTATGGTCTATATGCATATGATACTGTTTGGATGATTGCAAGAGGATTGAAAGAGTTATTTGATCAAAATGGTACCATTTCTTTCTCCAAGTATACACATGCTGGTAGTCTTAGTGGAGAGAGCTTGGATTTTAGTTCACTAGGAGTGTTTAATGAGGGAAATGAGCTGCTTAACAATCTATTGAATATCAGTATGATTGGCCTGACAGGGCCTATTCAGTTTCAAGATAGATACCCTTTACATCCCTCATATGATATCTTGAATGTTGTGAAATCTGGTATGAAGAGGATTGGATATTGGTCGAACCATTCCGGGCTATCTGTCGAGGCGCCCGAAACGCTGTATGGAAAAGCAGGCAATCGTACCGAACAGTTAGGCAGCACAGTGTGGCCTGGGGGATTGACAACAAAGCCTCGTGGTTGGGTTCTTCCACTCGATGGAAGACGGTTAAGAATTGGCGTTCCACGCCGAGTTAGTTATCAGGAGTTTGTGACGCCCGGAAGTGGTAACGAAACGATTAAAGGATACTGCATTGACGTGTTTGCTGCTGCGGTCAAGTTGCTTCCATATGCTGTTAATTATGAGTTTGTTTTGTTTGGAGATGGCAAGGAGAATCCTAGCTACTTTGAGCTTGTTAATAATGTTGCATTGAAAGAATTTGATGCTGCTGTTGGTGATATTGCAATTGTGACGAGTCGTACCAAGATTGTCGATTTTACGCAGCCTTATATCGAGTCGGGGCTAATAGTGTTGGCCCGTGTGAAGAATTTGAACTCGAGTCCTTTGGCGTTCCTTCGCCCGTTCACACCAATGTTGTGGATTGTCTCGGCAGCCTTTTTCCTTCTCATTGGATTAGTCGTGTGGATTTTGGAACGTCGAGATAATGACGAATTCCAAGGACATCCTAGGAAGCAATTCGTCACGATCCTTTGGTTTGGCTTCTCTACTATGTTTTTTGCACAAAGAGAAAACGTCATGAGCACGCCCGGTCGTTTCGTGCTTGTCATATGGCTTTTTGTTGTTCTAATTATCAACTCGAGCTACACCGCTAGTCTAACGTCGATATTCACGGTACAGCTAGCAACCTCACCTATTACAGGAATTGATTCATTGATATCTACCAATGTCCGTATAGGATTCCAAGTTGGTTCGTTTGCTGAAAGTTATTTAAGTGAGCAACTTAACGTCCACAAGTCAAGGCTCATTGCTCTTGGATCCCCACAAGAGTATGCTGCTGCTCTCAAGAACGGCACGGTGGGCGCTATCGTTGACGAGCAGCCATACATCGATGTTTTTCTCGCCGAGTACTGCGATTATTCGACAAAAGGCCAACAGTTCACCAAAAGTGGTTGGGGATTTGCATTTCCGCGAGACTCTCCATTGGCGGGAGACTTATCGACGGCCATACTCGCTCTATCTGAGAATGGCGGTCTTCAAAAGATTCACGATCAGTGGTTCTCAAGAAAGTCTTGCAGTTCTGGAGATTCCAATCTCGATCAAGAACAACTTCACTTGCAGAGTTTCATTGGACTCTTCTCCATTTGTGCCGGCGTATGTTTCTTCGCACTTTTCCTGCATTTCTTCTTGACGATGTGCCAATTCAACCGCCATTTGAAGCAAGATCCAGAAGCTTCGAGCAATCGCGATTCCAACCCTACGCGTCTGCGCAAATTCTTATCGTTTGCAGACACAAAGAGAGGAGGCTTATCGAAGAGAAAGATCGAAGATACATTCTCGAGTGAACGTGGAGAGAATTAG 5586 42.61 MANLFCDFRFLLLIAAVVFIYIQVESENHCTGQMRLLIDQISMQQGQIVAFEDERKRHFEERLQMKTLLQDLESQKTHSAIFMSFMDVAHVICLNFRIKSTFAHKYYLVGSLIVFLFLKSVGKGLQQLTDKTQVPVAAVVIMACNRADYLDKTIKSVLKYQTPVASKYPVFVSQDGSNPDVKKKALSFDRLAYMQHLDYGEVETERPGELIAYYKIAHDMEIAPDFFSYFEAAAMLLDKDKTIMAVSSWNDNGQKQFVHDPCNLSECLDPLQGSSMGQFFKQYLEPIKLNDVQIDWMSMDLGYLMEDKYVKHFADAVKKAKPVYGNDAVMKAFNVAGDVRIEYRDQSDFEHIARQFGAAMASLPSLNQNEKKKKKNEKNHKLSDLKTLGLQLLSSQAHINNLPLLLTFVSPSKPPQYVLEALLSLQSFFITVLPSLPSSSKPAADVQDDAELIYRTWLRSKFDELVKSLIDVAVSSECDDTLKEIVLDAIMEFVKVGNRGKFHSAVYHRFLQSIAHSSAPVNTLIALLVKKYFNHLDVRYFTYISIEKLTRTFEAEYMSGDRSVRINGDDGDHSREGVEFIHIVHSIISSIPPLENSNQSDYTMWVESGDDKVLSDNQEAKQLKMRKNDEEVLVILDQEVIPYLSNPIILCDFLTKSYDMGGVVSVMALSSLFLLMTKYGLEYPNFYEKLYALLVPSIFMAKHRAKFFQLLDSCLKSPLLPAYLAAAFAKKLSRLSLVVPPSGALIIIALIHNLLRRHPSINCLVHRENVSESKNDDSTSKEVAKGTDASEVEADTLNMKPGIDRFNYEETDPIKSSALRSSLWEIDCLRHHYCPPVSRLVLSLENDLTVRSKTTEIDVKDFVAGSYATILGQELKKKMKRVPLAFYQAIPTSLFSESDFPGWSFNHEHSEKNIDDFELDSNIAGHGREKRTQVSFFPMNFKEKRQKMGMFFPVPSIPFRRKVTIASMELANPVGTFGIGYGRISEGASRTEVVKVGAIFSLSSVNGKVSKIAIEAAEKDVNSDPSVLGGRKLSISIHDANYSGFLGITGAMKYMVADTVAILGPQDATMGHILSHLSNELHVPLLSFTALDPTLSTLQYPYFIQTAPNDQFQMTAIADMISYHGWHDVVVVFTDDDQCRNSMFALGDKIEEKGLKIPSKVALPPYPTATRTEVHNVLVNIKMMESRVIVLYTFSKTGFLVFEMAKSLGMMEAGYVWITSSWLSTVIDSTSPLPLKTANSIQGVLTLRLHTPESKRKRSFISRWNELSNGSIGLNTYGLYAYDTVWMIARGLKELFDQNGTISFSKYTHAGSLSGESLDFSSLGVFNEGNELLNNLLNISMIGLTGPIQFQDRYPLHPSYDILNVVKSGMKRIGYWSNHSGLSVEAPETLYGKAGNRTEQLGSTVWPGGLTTKPRGWVLPLDGRRLRIGVPRRVSYQEFVTPGSGNETIKGYCIDVFAAAVKLLPYAVNYEFVLFGDGKENPSYFELVNNVALKEFDAAVGDIAIVTSRTKIVDFTQPYIESGLIVLARVKNLNSSPLAFLRPFTPMLWIVSAAFFLLIGLVVWILERRDNDEFQGHPRKQFVTILWFGFSTMFFAQRENVMSTPGRFVLVIWLFVVLIINSSYTASLTSIFTVQLATSPITGIDSLISTNVRIGFQVGSFAESYLSEQLNVHKSRLIALGSPQEYAAALKNGTVGAIVDEQPYIDVFLAEYCDYSTKGQQFTKSGWGFAFPRDSPLAGDLSTAILALSENGGLQKIHDQWFSRKSCSSGDSNLDQEQLHLQSFIGLFSICAGVCFFALFLHFFLTMCQFNRHLKQDPEASSNRDSNPTRLRKFLSFADTKRGGLSKRKIEDTFSSERGEN 1861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7732635 7760787 + CmaCh19G008010.1 Cma19g00801 315489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00801 1861 Pfam Receptor family ligand binding region 1012 1367 IPR001828 -
Cma19g00801 1861 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 135 218 IPR029044 -
Cma19g00801 1861 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 219 299 IPR029044 -
Cma19g00801 1861 Pfam CBF/Mak21 family 665 840 IPR005612 -
Cma19g00801 1861 SUPERFAMILY Periplasmic binding protein-like II 1403 1764 - -
Cma19g00801 1861 Pfam GNT-I family 272 357 IPR004139 GO:0006486|GO:0008375
Cma19g00801 1861 Pfam GNT-I family 123 218 IPR004139 GO:0006486|GO:0008375
Cma19g00801 1861 SUPERFAMILY Nucleotide-diphospho-sugar transferases 138 357 IPR029044 -
Cma19g00801 1861 SMART GluR_14 1427 1764 IPR001320 GO:0015276|GO:0016020
Cma19g00801 1861 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 981 1850 - -
Cma19g00801 1861 Pfam Ligand-gated ion channel 1764 1794 IPR001320 GO:0015276|GO:0016020
Cma19g00801 1861 CDD GluR_Plant 1424 1762 - -
Cma19g00801 1861 Gene3D - 1688 1769 - -
Cma19g00801 1861 Gene3D - 1420 1535 - -
Cma19g00801 1861 Gene3D - 1012 1357 - -
Cma19g00801 1861 Gene3D - 1109 1382 - -
Cma19g00801 1861 Pfam Bacterial extracellular solute-binding proteins, family 3 1439 1763 IPR001638 -
Cma19g00801 1861 Gene3D - 1536 1676 - -
Cma19g00801 1861 SUPERFAMILY Periplasmic binding protein-like I 988 1417 IPR028082 -
Cma19g00801 1861 PANTHER GLUTAMATE RECEPTOR 3.3 981 1850 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01329 Cma19g00801 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00801 Cma-Chr19:7732635 Cma20g00624 Cma-Chr20:2914311 0 dispersed
Cma01g02028 Cma-Chr1:12944004 Cma19g00801 Cma-Chr19:7732635 0 wgd
Cma11g01329 Cma-Chr11:8810190 Cma19g00801 Cma-Chr19:7732635 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00801 K05387 - pda:103699003 1443.33