Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00814 ATGGCTGCCTTTGTAGCTATAGTAGTCTACTTGGTTCTTCTGCAAACACCCAATCTCTTTGCGGCTAAGGATGAAGAGTGGAAATCTGCTACTGCAACATACTCCAAAGAAACAGATGGGTCCATTGTTACAGAAGGTGCATGTGGATATGGAGATCTGCATAAAATTAGCTATGGAAAATATAGCGCAGGATTGAGTAGCATGTTGTTTAATAGAGGGAGTACCTGTGGAGCTTGCTATGAGCTTAGATGTGTTGACCACATCTTGTGGTGCTTGCAAGGAAGCCCGACCGTCATTCTAACAGCCACCGACTTCTGTCCTCCAAATTACGGCCTATCTTCCGATTATGGTGGTTGGTGTAATTTTCCTAAAGAACATTTTGAGATGTCAGAGGCAGCATTTGCTGAAATATCAGAGAAAAAAGCAGATATTGTGCCAGTTCAATATAGGAGGACGAGGTGTGACCGAAGTGGTGGATTGAGGTTCACGGTTAGTGGAAATTCTCGTTTCTTTCAAGTTCTGATTACCAATGTTGGAATGGATGGTGAATTAGTGGCAGTGAAGGTAAAAGGATCAAGAACAGGATGGATACCATTGGCAAGGAACTGGGGACAAAACTGGCAAAGCAATGTCAATCTTCATGGGCAACCTCTCTCTTTCGAAGTTACCTCTAGCAGTGGAAGAACACTTACTTCCTACAGCGTTGCACCTGCAAACTGGCAGTTTGGGCAGACATTTGAAGGAAAACAATTTTGA 756 43.39 MAAFVAIVVYLVLLQTPNLFAAKDEEWKSATATYSKETDGSIVTEGACGYGDLHKISYGKYSAGLSSMLFNRGSTCGACYELRCVDHILWCLQGSPTVILTATDFCPPNYGLSSDYGGWCNFPKEHFEMSEAAFAEISEKKADIVPVQYRRTRCDRSGGLRFTVSGNSRFFQVLITNVGMDGELVAVKVKGSRTGWIPLARNWGQNWQSNVNLHGQPLSFEVTSSSGRTLTSYSVAPANWQFGQTFEGKQF 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7812356 7814113 + CmaCh19G008140.1 Cma19g00814 315502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00814 251 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Cma19g00814 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Cma19g00814 251 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Cma19g00814 251 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Cma19g00814 251 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Cma19g00814 251 PANTHER EXPANSIN-A20 6 251 - -
Cma19g00814 251 Pfam Expansin C-terminal domain 161 237 IPR007117 -
Cma19g00814 251 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Cma19g00814 251 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Cma19g00814 251 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Cma19g00814 251 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Cma19g00814 251 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Cma19g00814 251 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Cma19g00814 251 Pfam Lytic transglycolase 63 149 IPR009009 -
Cma19g00814 251 Gene3D - 13 155 IPR036908 -
Cma19g00814 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Cma19g00814 251 Gene3D - 159 251 IPR036749 -
Cma19g00814 251 SMART dpbb_1 62 149 IPR007112 -
Cma19g00814 251 PANTHER EXPANSIN-A15 6 251 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00814 Cma-Chr19:7812356 Cma20g00396 Cma-Chr20:1904421 2.99E-92 dispersed
Cma11g01319 Cma-Chr11:8770107 Cma19g00814 Cma-Chr19:7812356 1.03E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00814 - - csv:101213241 497.278