Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00816 ATGGCGACTATAGCAGGGACGCCATGGGTGAGGATTAGGGCCTTCCCGATGCTGAATCCTCCAATTCTGCATCACTCAAACTTATATTTTGCGGAGAGATGCTTCCCTAAATTTCGAAGGAGTTTTTCTGTATCGGCGTCCGTGAATAAGGTCGATGGAGAAGTTAGAGTCCGTTTTGCTCCTTCGCCTACTGGAAATCTTCACGTTGGTGGAGCAAGAACTGCGCTCTTCAATTACTTGTTTGCTAGGGGCAATGGTGGAAAGTTCGTTCTGAGAATTGAAGATACTGACTTGGAAAGGTCCACTCGACAATCTGAGGAGGCTGTGTTGAAAGATCTTTCATGGCTTGGTCTCGATTGGGATGAAGGTCCAAGTGCTGGAGGAGATTACGGTCCTTACCGTCAATCAGAAAGAAATACTTTATACAAACAGTATGCGGAGAAGCTTTTAGAATCCGGTCAAGTATATCGATGTTTTTGTTCAAATGAGGAACTAGAAAAAATGAAGGAGGTCGCAAAGCTGAAGCAACTGCCACCTGTATACATGGGAAAGTGGGCCACTGCTACTGATGAAGAAGCACAGGAAGAATTGGAAAAGGGTACCCCTTACACTTATCGATTTCGCGTGCCTCAACAAGGGAGTTTGAAAATCAATGATCTCATACGAGGGGAAGTTAGCTGGAACTTGAATACACTTGGAGATTTTGTAATTATGAGGAGCAATGGGCAACCCGTCTATAATTTTTGTGTCACTGTCGATGATGCTACCATGGCTATCTCACATGTCATAAGGGCAGAGGAGCATTTACCAAACACTCTTAGGCAGGCGCTGATATATAAGGCTCTTGGTTTCCCAATGCCTTACTTTGCACACGTTTCCTTAATTCTTGCACCTGATCGTAGTAAACTGTCAAAACGACATGGTGCAACATCAGTTGGTCAGTTCAGGGAGATGGGATATCTACCCGAGGCTATGGTTAACTACTTGGCTCTGTTAGGTTGGGGGGATGGTACCGAGAACGAGTTTTTTACTCTCGAACAACTTGTGGAAAAGTTTTCAATTAGCCGTGTAAACAAAAGTGGTGCTGTTTTTGATTCTACCAAGTTAAGGTGGATGAATGGTCAGCATTTGAGAGCCCTTCCATCTGAGGAATTGACCAAGCTTATTGGTGAGCGCTGGAAGAGCACGGGTATCCTGACAGAATCAGAGGGGCCATTTATTGAGGAATCAGTTCAGCTGCTAAAAGATGCAATTGATTTGATAACTGATGCTGACAAGGCGCTCTCAAACCTTCTGTCCTATCCTCTGCACACTACGCTGGCAAGTTCCGAAGCTAAGCCTCTTGTAGAAGATAAGCTTTCTGAATTCTCAGCCAGCCTCATAGCTGCATATGATAGTGGCAAAATCCTCAGTGCGCTTGAAGAAGGCCCTTCTGGCTGGCAGAAGTGGGTGAAAACCTTTGGTAAATCATTGAAACGCAAGGGAAAATCACTTTTCATGCCACTACGTTTGTTGCTCACTGGGAAAATTCATGGCCCTGATATGGGGGCCAGCATGGTCTTACTCCATAAAGCAGGATCGTCTGGTGTCGTTGCTCCTCAAGTCGGGTTCGTGACACTTAACGACAGGTTTGAAATTCTTAGACAAATTGACTGGGATTCAGTGACCCAGGATAGCCCTCTTTTCGAGTCATCTGCCCCTGCGTCCGTCCCCAACTGA 1719 45.49 MATIAGTPWVRIRAFPMLNPPILHHSNLYFAERCFPKFRRSFSVSASVNKVDGEVRVRFAPSPTGNLHVGGARTALFNYLFARGNGGKFVLRIEDTDLERSTRQSEEAVLKDLSWLGLDWDEGPSAGGDYGPYRQSERNTLYKQYAEKLLESGQVYRCFCSNEELEKMKEVAKLKQLPPVYMGKWATATDEEAQEELEKGTPYTYRFRVPQQGSLKINDLIRGEVSWNLNTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALGFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLEQLVEKFSISRVNKSGAVFDSTKLRWMNGQHLRALPSEELTKLIGERWKSTGILTESEGPFIEESVQLLKDAIDLITDADKALSNLLSYPLHTTLASSEAKPLVEDKLSEFSASLIAAYDSGKILSALEEGPSGWQKWVKTFGKSLKRKGKSLFMPLRLLLTGKIHGPDMGASMVLLHKAGSSGVVAPQVGFVTLNDRFEILRQIDWDSVTQDSPLFESSAPASVPN 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7816251 7823798 + CmaCh19G008160.1 Cma19g00816 315504

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00816 572 PANTHER GLUTAMATE--TRNA LIGASE, MITOCHONDRIAL-RELATED 42 549 - -
Cma19g00816 572 Gene3D HUPs 46 379 IPR014729 -
Cma19g00816 572 Pfam tRNA synthetases class I (E and Q), catalytic domain 54 371 IPR020058 GO:0004812|GO:0005524|GO:0043039
Cma19g00816 572 CDD GluRS_core 54 378 IPR033910 GO:0006424|GO:0008270
Cma19g00816 572 Pfam Anticodon binding domain 401 525 IPR045462 -
Cma19g00816 572 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 365 524 IPR008925 GO:0000049
Cma19g00816 572 Hamap Glutamate--tRNA ligase [gltX]. 54 538 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Cma19g00816 572 PANTHER GLUTAMATE--TRNA LIGASE 42 549 - -
Cma19g00816 572 PRINTS Glutamyl-tRNA synthetase signature 58 70 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma19g00816 572 PRINTS Glutamyl-tRNA synthetase signature 72 83 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma19g00816 572 PRINTS Glutamyl-tRNA synthetase signature 87 100 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma19g00816 572 PRINTS Glutamyl-tRNA synthetase signature 244 254 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma19g00816 572 PRINTS Glutamyl-tRNA synthetase signature 260 268 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Cma19g00816 572 SUPERFAMILY Nucleotidylyl transferase 55 364 - -
Cma19g00816 572 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 61 72 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cma19g00816 572 Gene3D - 439 528 IPR020751 -
Cma19g00816 572 TIGRFAM gltX_bact: glutamate--tRNA ligase 54 525 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00816 K01885 EARS, gltX; glutamyl-tRNA synthetase [EC:6.1.1.17] - csv:101212759 1082.4
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g314 . Blo15g00412 Bda06g00451 . Bpe07g00684 . . Bma12g00888 Cmo19g00835 . . . . . Sed05g2139 . Cpe15g00657 Bhi05g01543 Tan02g0541 Cmetu11g0170 . Hepe02g0346 . . Cla02g00327 Cam02g0336 Cec02g0336 Cco02g0340 Clacu02g0327 Cmu02g0325 Cre02g0658 . . . Cone10ag1201 . Csa07g00215 . . . . . . . . . . . . . . Cma19g00816 . Car19g00634 . . . . . . . . . . . . . . . . Lsi11g01310 . Chy01g00566 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010497 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00816 Cma_Chr19 FPKM 8.644309 8.442767 19.705875 19.269054 44.49894 40.641663 45.127335 28.423717 29.080715 28.01012