Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00818 ATGCTTCAAACTTTCATAACGTGTCGCCTCTTCAGGCTCTCTGGCGTGTCCATATTTAGAAATGGAATGAGAAAATCACCACACAACATTGTTTCTTGCAGGCATTACAACATGAACCGCATCAGATTGGTGTGGTCTCGCATGTGGAATGTTCTCTCTGACTTCTTTGTGTCAGTTGGCTTATCAGAAAATCTGTCAGTTGCAATATTTGTGATGGACTCACTGAGACAGCTCGCCATGAAATTTTTGGAGCGTGAGGAGCTTGCGAATTATAACTTCCAGAATGAATTTCTGAGACCTTTCGTAATAGTTATGCAGAAAAGCAACTCCACAGAAATTAGGGAATTAATAGTTCGATGCATTTCGCAGATGGTTCTCAGTCGGGTCAATAATGTGAAATCTGGATGGAAAAGTGTTTTCATGGTTTTCACTGCTGCTGCTGCTGATGAGCGGAAGAATATTGTCTTATTAGCTTTTGAAACCATGGAAAAAATAGTTCGAGAATACTTTCCTTATATAACTGAAACTGAAACTACAACATTTACTGATTGTGTTCGATGTCTGATAACTTTTACAAATAGCAGATTTAACAGTGATGTAAGTCTCAATGCCATTGCATTCCTCCGGTTTTGTGCCGTAAAACTTGCGGAAGGGGGACTTGTTTGCTATGAGATGGTGGGAGAAAATGGTTCATCCAAATCTCTTGATGCACCCACACCTACACCCACACCCCCAGATAAGGATGATTATGCTTCCTATTGGGTTCCTTTGCTTGCAGGGCTATCAAAGTTAACATCCGATCCAAGATCACCAATCAGGAAAAGTTCCTTGGAAGTACTTTTTGATATCCTGAAGGATCATGGTCATCTTTTCTCACGTCAATTTTGGGTTGGTGTTACTAATACCGTAGTTTTCCCCATATTCAATTCTTTGCATGAGAAGAAAGAAGTGGACATGAATGAACTTGATGAACATTCAGAAGGAAGTACATGGGATTCTAGTACCTGTCAAGTGGCAGCTGATTGTTTAGTAGATCTGTTCATTAGTTTTTTCAGTGTAATAAGGTCTCAACTGCCTGGCGTGGTGAGGATTCTGACGGGACTCATTAGTAATCCGATCAAGGGTCCTGCCAGCACGGGCGTCGCCGCGTTGCTGCGTTTGGTAGGCGACTTGGCTAATAGGCTTACTGAAAAGGAATGGAGAGAGATTTTTCTTGCTATGAAGGAAGTGGCCACATTACCTGTGCCTGGATTTATCAAGGTCCTGAGAACCATGGACGGCGTTAATGTTCCCGGGATCTCTCGATCTTCTAATGATGTCGATGTGGCTTCAGATCAAGGTCTCTCAACTGATGGTCTCGATGACGATGATCTGCAAACGGCCACCTACATTGTTTCGAGAATGAAGAGTCATATCTCAATGCAACTCCTCTTCTTACAGGTAGTTACTGATCTCTACAAGAACCATACCCAACCATTCTCATCAGACAACATTTCCATCATTCTAGACATCTTTTCTTCCATTTCCACACACGCCCAGAAACTGAACTCCGACACGATCCTTCAAAAGAAGCTACAGAAAGTATGCTCCATCCTGGACATATCTGACCCACCCGTGGTTCACTTCGAAAACGAGTCGTATCAGAGCCACCTCAACTTTCTCCAGAGTATGCTCGCGAAGAATCGGTTGCTAACCGATTCAACTCTTATTGAATCCGAACTCATCACGTTATGTGAAGAAATTTTGCATATTTACTTGAAGTGCACCGAGATGCCAGGTGTGACGAAAGAAACCAACCCGGCCGTGCCACATTGGATTCTTCCTTTGGGTCCAGCAAGGAAGGAGGAACTGGCTGCTCGAACGTCTCTAGTCGCCTCAGCATTACGGGTTCTAAGCGGGTTCGAAAGGGATCTATTTAAAAGGTACGCTCCACAGCTTTTTCCATTGTTGGTAGAGCTTATAAGGAGTGAACATAGCTCTGGAGAAGTTCAGGTTGTTTTGAGCAGCATATTTCAATCATGTATAGGCCCAATAATCATGCAATAA 2046 43.01 MLQTFITCRLFRLSGVSIFRNGMRKSPHNIVSCRHYNMNRIRLVWSRMWNVLSDFFVSVGLSENLSVAIFVMDSLRQLAMKFLEREELANYNFQNEFLRPFVIVMQKSNSTEIRELIVRCISQMVLSRVNNVKSGWKSVFMVFTAAAADERKNIVLLAFETMEKIVREYFPYITETETTTFTDCVRCLITFTNSRFNSDVSLNAIAFLRFCAVKLAEGGLVCYEMVGENGSSKSLDAPTPTPTPPDKDDYASYWVPLLAGLSKLTSDPRSPIRKSSLEVLFDILKDHGHLFSRQFWVGVTNTVVFPIFNSLHEKKEVDMNELDEHSEGSTWDSSTCQVAADCLVDLFISFFSVIRSQLPGVVRILTGLISNPIKGPASTGVAALLRLVGDLANRLTEKEWREIFLAMKEVATLPVPGFIKVLRTMDGVNVPGISRSSNDVDVASDQGLSTDGLDDDDLQTATYIVSRMKSHISMQLLFLQVVTDLYKNHTQPFSSDNISIILDIFSSISTHAQKLNSDTILQKKLQKVCSILDISDPPVVHFENESYQSHLNFLQSMLAKNRLLTDSTLIESELITLCEEILHIYLKCTEMPGVTKETNPAVPHWILPLGPARKEELAARTSLVASALRVLSGFERDLFKRYAPQLFPLLVELIRSEHSSGEVQVVLSSIFQSCIGPIIMQ 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7831288 7833984 + CmaCh19G008180.1 Cma19g00818 315506

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00818 681 SUPERFAMILY ARM repeat 50 673 IPR016024 -
Cma19g00818 681 PANTHER BREFELDIN A-INHIBITED GUANINE NUCLEOTIDE-EXCHANGE PROTEIN 1 29 676 - -
Cma19g00818 681 Pfam C-terminal region of Mon2 protein 248 318 IPR032817 -
Cma19g00818 681 Gene3D - 71 295 IPR011989 -
Cma19g00818 681 Pfam Domain of unknown function (DUF1981) 81 163 IPR015403 -
Cma19g00818 681 PANTHER GUANYL-NUCLEOTIDE EXCHANGE FACTOR 29 676 - -
Cma19g00818 681 Pfam BIG2 C-terminal domain 474 672 IPR046455 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00818 K18442 ARFGEF, BIG; brefeldin A-inhibited guanine nucleotide-exchange protein - csv:101212521 1074.69
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01317 Cma19g00818 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01983 Cma-Chr14:13930529 Cma19g00818 Cma-Chr19:7831288 0 dispersed
Cma19g00818 Cma-Chr19:7831288 Cma11g01317 Cma-Chr11:8749582 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g315 . . . . . Bpe12g00159 . . . Cmo11g01803 . . . . Sed05g2136 Cpe04g00646 Cpe15g00658 Bhi05g01542 Tan02g0540 Cmetu01g0851 Lac12g0438 Hepe02g0345 . . . . . . . . . . . . . . Csa07g00216 . . . Blo13g00462 . . . . . . . . . Cma11g01317 Cma19g00818 Car11g01430 Car19g00635 . . . . . . . . . . . . . . . . Lsi11g01311 . Chy01g00565 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0025975 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00818 Cma_Chr19 FPKM 2.553275 2.588528 1.938722 1.190929 1.928175 1.606032 1.36672 2.195946 2.462192 1.822296