Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00822 ATGGATAATGAAGTGATTGAGTTCGATATTGGATTGGGAGGAGGCAGTGGGAGGGAGGGAGATGACTATTCTATTGGTATGGTGCATCATTCCATTGAGGATGAAGAAATGGTTGATAGCCCTCCTCTGAGTAGCCTTGGTGGTGGCGCTGGCAGTGGTGAGATATATCTTCCTGAGGGTGATCTTTTGGATCTTGAACCTTATGAAGGAATGGAATTCGAGTCTGAAGAGGCTGCCAAAGCATTCTATAATTCATATGCTCGACGTGTTGGGTTCAGTACTCGTGTCAGCTCATCCCGTCGGTCTAGGCGCGATGGAGCGATTATACAAAGGCAATTTGTTTGTGCCAAAGAGGGTTTCAGGAATATGAATGAGAAGCGAACTAAAGATAGAGAAATTAAGCGCCCTCGAACCATCACTAGAGTGGGTTGCAAAGCATCCTTGTCTGTAAAGATGCATGATTCTGGGAAATGGGTTGTCTCTGGATTTGTTAGAGAGCATAATCATGAGTTAGTTCCTCCTGACCAGGTGCACTGCTTGCGGTCTCATAGGCAAATATCAGGTCCAGCAAAGACCTTAATTGATACTTTACAGGCTGCTGGGATGGGTCCTCGTAGGATTATGTCAGCACTGATAAAGGAGTATGGAGGAATCAGTAAAGTTGGATTTACTGAGGTTGATTGTCGAAATTATATGAGGAATAATCGCCAAAGGAGCTTAGAAGGTGACATTCAGCTGCTTTTGGATTACTTGAGGCAAATGCATTCTGAAAATCCGAACTTCTTCTATGCGGTGCAGGGTGAGGAGGATCAATGTGTGGGCAATGTCTTTTGGGCCGATCCAAAGGCTCGGATGAACTATACTTACTTTGGGGATACCGTTACATTTGACACTACCTATAGGTCAAACAGATATCGTCTGCCCTTTGCTCCTTTCACCGGGGTGAATCACCATGGACAGCCCGTGTTATTTGGCTGTGCTTTTCTAATAAATGAATCTGAAGCATCATTTAATTGGCTATTTAGAACGTGGCTTTTGGCAATGTCTGGTCGCCCACCTGTGTCAATTACTACCGATCATGATGCAATAATACAGTCAGCCATTACACAAGTTTTCCCTGAGACCCGTCACCGTTTCTGCAAATGGCATATTTTCAAGAAATGCCAGGAGATGCTTTCTCATGTGTTTCTGAAACACCCAAGCTTTGAAGCTGACTTCCACAAATGTGTAAATTTGACCGACTCTATTGAGGAATTTGAGTCCTGCTGGCTGTCACTTGTTGACAGATATGATCTCAGGGATCACGAGTGGCTTCAAACAATTTACTCTGCTCGGAGGCAGTGGGTTCCGGTGTATTTGCGGGATACTTTTTTTGCTGAAATGTCTATTACCCAGCGAAGTGATAGCATGAATTCATATTTTGATGGGTACGTGAATGCTTCGACCAATTTGAGTCAGTTCTTCAAACTGTATGAAAAAGCTTTAGAGAGTCGGAATGAGAAAGAAGTGAAAGCAGATTATGATACAATGAACACTTCCCCTGTTCTAAAAACTCCATCTCCAATGGAAAAACAGGTTTCTGAGCTTTACACCAGGAAACTGTTCTCAAGATTCCAAGAGGAGTTAGTTGGCACATTAACTTTTATGGCGTCGAAGGCTGATGACGATGGGGAAATTATAACATATCAAGTGGCCAAATTTGGCGAGGATCATAAAGCTCACTATGTGAAATTCAATGTTTTGGAGATGAGAGCAAGTTGTAGTTGCCAGATGTTCGAGTTCTCAGGCCTTCTGTGCGGACATATCTTGGCTGTCTTCAGAGTGACCAATGTTCTTACACTTCCATCTTATTACATATTGAAACGATGGACAAGAAATGCGAAGAGTAACGTAATGTTGGATGACCATGTGAATGATATCTATAACAACTATCTTGAATCTCATACTGTGAGATACAATACCCTACGCCACGAGGCTTTTAAATTCATTGAGGAAGGAGCAAAGACTGTGGATACGTATAATGTGGCAAAAGATGCCCTTCAAGAGGCTGCAAAAAGGGTTGCTCATACAATGAGGAATGATGGAAAAAATTCTACTATCAATGGGCGAATTAAAATGGACCCTGGAAATGACAGAAGCTATACATATCATAGTAGCAGCAGGGATCACGACGAGATATTGAGTAAAAACATGTCGGAGGATGACTTGGACAAGAAAATCAACGAGCTTACCAATGAATTGGAGTGTGCAAATCGGAAGTGCGATGTTTACCGGTCTAACCTTTTTTCAATGCTGAAAGACATTGAGGACCACAAACTGCAATTATCTATTAAAGTGCAGAACATAAAAATTAGTATGAAAGATAGCATTTGA 2373 42.18 MDNEVIEFDIGLGGGSGREGDDYSIGMVHHSIEDEEMVDSPPLSSLGGGAGSGEIYLPEGDLLDLEPYEGMEFESEEAAKAFYNSYARRVGFSTRVSSSRRSRRDGAIIQRQFVCAKEGFRNMNEKRTKDREIKRPRTITRVGCKASLSVKMHDSGKWVVSGFVREHNHELVPPDQVHCLRSHRQISGPAKTLIDTLQAAGMGPRRIMSALIKEYGGISKVGFTEVDCRNYMRNNRQRSLEGDIQLLLDYLRQMHSENPNFFYAVQGEEDQCVGNVFWADPKARMNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCAFLINESEASFNWLFRTWLLAMSGRPPVSITTDHDAIIQSAITQVFPETRHRFCKWHIFKKCQEMLSHVFLKHPSFEADFHKCVNLTDSIEEFESCWLSLVDRYDLRDHEWLQTIYSARRQWVPVYLRDTFFAEMSITQRSDSMNSYFDGYVNASTNLSQFFKLYEKALESRNEKEVKADYDTMNTSPVLKTPSPMEKQVSELYTRKLFSRFQEELVGTLTFMASKADDDGEIITYQVAKFGEDHKAHYVKFNVLEMRASCSCQMFEFSGLLCGHILAVFRVTNVLTLPSYYILKRWTRNAKSNVMLDDHVNDIYNNYLESHTVRYNTLRHEAFKFIEEGAKTVDTYNVAKDALQEAAKRVAHTMRNDGKNSTINGRIKMDPGNDRSYTYHSSSRDHDEILSKNMSEDDLDKKINELTNELECANRKCDVYRSNLFSMLKDIEDHKLQLSIKVQNIKISMKDSI 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7848454 7851407 + CmaCh19G008220.1 Cma19g00822 315510

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00822 790 SMART 26again6 585 612 IPR006564 GO:0008270
Cma19g00822 790 MobiDBLite consensus disorder prediction 694 730 - -
Cma19g00822 790 Pfam FAR1 DNA-binding domain 82 173 IPR004330 -
Cma19g00822 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 40 763 - -
Cma19g00822 790 MobiDBLite consensus disorder prediction 716 730 - -
Cma19g00822 790 ProSiteProfiles Zinc finger SWIM-type profile. 578 610 IPR007527 GO:0008270
Cma19g00822 790 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 40 763 IPR031052 GO:0006355
Cma19g00822 790 Coils Coil 733 760 - -
Cma19g00822 790 Pfam SWIM zinc finger 562 608 IPR007527 GO:0008270
Cma19g00822 790 Pfam MULE transposase domain 294 387 IPR018289 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00822 - - - csv:101218471 1515.75
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01315 Cma19g00822 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00980 Cma-Chr10:5074472 Cma19g00822 Cma-Chr19:7848454 0 dispersed
Cma11g00808 Cma-Chr11:3947589 Cma19g00822 Cma-Chr19:7848454 0 dispersed
Cma16g00493 Cma-Chr16:2521897 Cma19g00822 Cma-Chr19:7848454 1.04E-153 dispersed
Cma16g00494 Cma-Chr16:2527030 Cma19g00822 Cma-Chr19:7848454 1.89E-164 dispersed
Cma19g00855 Cma-Chr19:8020910 Cma19g00822 Cma-Chr19:7848454 4.46E-59 dispersed
Cma11g01315 Cma-Chr11:8739741 Cma19g00822 Cma-Chr19:7848454 0 wgd
Cma19g00822 Cma-Chr19:7848454 Cma20g00708 Cma-Chr20:3264879 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g319 . . . . . . . . Cmo19g00838 Cmo11g01806 . . . . Sed01g0791 . . Bhi05g01538 Tan02g0536 Cmetu02g1725 . Hepe02g0341 . . . . . . . . . . . . . . Csa07g00221 . . . . . . . . . . . . . Cma11g01315 Cma19g00822 . Car19g00638 . . . . . . . . . . . . . . . . . . Chy01g00559 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000034 2 16 6 1 1 11 17 9 10 12 11 12 16 12 12 16 11 24 14 12 12 11 10 1 9 10 11 36 30 10 365
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36916 PF10551 MULE 5.60E-29 CL0219 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00822 Cma_Chr19 FPKM 9.274336 9.357504 9.475068 9.894563 7.058504 7.711858 8.946493 8.181164 8.444159 9.538631