Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00826 ATGCTGTGGTTCTTCAGGGACAAAGGATTTGATGATGGAAGCATCGATAAGATGTTTAAAAAGTGTAGGCGTTTGGAAGGTATGCAGAATGAAAGAGCTGCTGAAAATTGGGAATATTTGGAAGGAATTGGGATTCAAAAGAGGAAACTCCCTTCTGTTGTTTCCAAATGTCCTAAGATTCTAGTTCTTGGTCTTCAAGAGAAAATTGCTCCCATGGTTGAGTGCCTTGCAACACTCACCACTAAGCCTCGTGAAATTGCTACAGCTATTGCCAAATTTCCTGGCATTCTTTCCTACAGTGTTGAAGAGAAGCTATGCCCACTTTTGGCTTTCTTTCAAGCATTGGGTGTCCCTGAAAAGCAGCTTGGAAAGATGATTCTACTCAACCCGAGGCTTATTAGCTACAGCATTGAATCGAAGCTCATTGAAACTGTGGATTTTCTTGCTGGGGTTGGGCTAACGAAGGAGGGGATGATTGGAAAAGTTCTAGTAAAGAATCCATTTCTCATTGGATATAGTGTTCATAAAAGGCTCCGTCCTACTTTCGAGTTTCTGAAATCGATCGGTCTCAGTGAGATGGATCTTCAAGCAGTTGCATTGAAATTTCCAGACATTTTGTGTAGGGATGTGGACAAAGTTTTGAGACCCAATTTGGATTATCTGAGGAGACGTGGGTTTAAAGATGGAGAAATAGTGTCTTTGGTGACTGGTTATCCTCCTATTTTGATCAAGAGCATTCAACATTCTTTAGAACCTCGGATCAGATTTTTAGTCGAAATAATGGGAAGAACACTTGACGAAGTTGCCGAATATCCCGAGTTTTTTAAGCATGGCTTGAAGAAAAGACTCGAGTTGCGGCATAGATTGTTGAAAGAGAAGACAATGGACTTTACCTTGAGTGAATTGTTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGAGTTTGTTATGA 954 40.25 MLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRKLPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFLIGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDGEIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRLLKEKTMDFTLSELLECNQKKFMMKMSLL 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7861147 7862100 - CmaCh19G008260.1 Cma19g00826 315514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00826 317 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL 1 316 - -
Cma19g00826 317 Pfam mTERF 4 310 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 Gene3D Transcription termination factor 3, mitochondrial 1 101 IPR038538 -
Cma19g00826 317 Gene3D Transcription termination factor 3, mitochondrial 102 316 IPR038538 -
Cma19g00826 317 SMART mt_12 123 154 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 265 296 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 51 82 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 87 118 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 196 227 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 160 191 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 16 46 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 SMART mt_12 232 264 IPR003690 GO:0003690|GO:0006355
Cma19g00826 317 PANTHER CGI-12 PROTEIN-RELATED 1 316 IPR003690 GO:0003690|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00826 K15032 MTERFD; mTERF domain-containing protein, mitochondrial - csv:101218706 565.459
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00688 Cma-Chr1:3583872 Cma19g00826 Cma-Chr19:7861147 5.67E-06 dispersed
Cma03g01029 Cma-Chr3:7164874 Cma19g00826 Cma-Chr19:7861147 6.93E-12 dispersed
Cma09g00994 Cma-Chr9:5076383 Cma19g00826 Cma-Chr19:7861147 2.61E-22 dispersed
Cma14g01107 Cma-Chr14:8138281 Cma19g00826 Cma-Chr19:7861147 7.58E-16 dispersed
Cma18g01140 Cma-Chr18:9216185 Cma19g00826 Cma-Chr19:7861147 3.92E-09 dispersed
Cma19g00826 Cma-Chr19:7861147 Cma07g00828 Cma-Chr7:3838530 2.25E-22 dispersed
Cma19g00826 Cma-Chr19:7861147 Cma19g00667 Cma-Chr19:6990266 4.78E-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g322 . . . . . . . . Cmo19g00843 . . . . . Sed05g2133 . Cpe15g00664 Bhi05g01534 Tan02g0531 Cmetu11g0650 Lac12g0430 Hepe02g0338 . . Cla02g00320 Cam02g0328 Cec02g0328 Cco02g0332 Clacu02g0318 Cmu02g0317 Cre02g0650 . . Cone3ag1260 Cone10ag1198 . Csa07g00224 . . . . . . . . . . . . . . Cma19g00826 . Car19g00641 . . . . . . . . . Cla02g01049 Cam02g1120 Cec02g1125 Cco02g1158 Clacu02g1106 Cmu02g1066 Cre02g1374 Lsi11g01318 . Chy01g00556 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003040 0 1 1 1 1 2 1 3 2 3 2 2 1 1 1 1 2 2 1 2 2 1 2 2 3 1 2 2 3 1 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36917 PF02536 mTERF 2.20E-56 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00826 Cma_Chr19 FPKM 2.22327 3.747948 4.848997 6.068451 40.494446 31.410337 41.75174 5.74876 4.08931 5.290709