Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00829 ATGATGTTTAGTAATAGAAAGAGATCACTGTTGCGCAAAATATCCCCATTGGAGCTTCTTCCTTGCAGTATCTTCCGTACACGTGCAAGAGAGAAAGATCAGAAAATGGATGAGAAGAGTGAAACCAAAGAGCCATCAAGGTCTAATCTGTCATATCCTTCTCATCAAATCAGCCCTACAGAGAAGAGGACACCAATTGAAGTCTTTCAAGTGCCTGAAAGTTTAGGAGATGACCATTCCAAAGGAGAGAGAGATGCCACTCATGATCAGGTTGGGGAAAAATCAACCGTCACTTCCTTTTGTCCTGCTGCCAGCATGAAAGCATCTAAAAAGTGGATGGCATTTGAAGGTGAAAACTTAGATATAACAAAGACATACACAAAGAGCTTCAGTGGTAGCTTTGGGTCATCTTTTACTGAACTCTTGGAAACAACCATGACAAAAAAGACTGCAGAGAAGAATAAGATTGGCGATTTGTCGTCGTTGACGTATGTTATCTCAGATGCAACAAAACCGGATTGCCCCATCGTGTTTGCCAGTGATAGGTTCTTGGCTATGACTGGATATACATTGGAGGAGCTCATTGGAAGGAACTGCCGTTTTCTTCAAGGACCGGAGACGGATAAGAACGAAGTAGCAAAAATACGAGATGCAATTGGAAAGGGGAATAGCTACTGTGGCAAGCTCTTGAACTACAAGAAGAATGGTACTCCTTTCTGGAATCTTCTCACTGTTGGGCCTGTCAAGGATTCCCATGGCAACATCATCAAATATATTGGAATGCAGGTTGAAATTGGCAAAAACACAGAAGAAAAAGAGAAGTCCACGAGGTCCATGTCCATGACAGAGGTCCAAGCTGAGAAGGTAATTAGGTCCATTGAGGTCGAGGCTGCGAAAAGTCTAAGATCTTACGTTCAGTCAAAAAGACATGATGCAGATAGAAAGCACGAAGAGCCAGAAACGACTGGCAAGAATACTAGCACAGCTGATAACCAAAAGGCTCGGTTAGATCTAAAAAACGCTCCATCCTACTTCAATTCATACGAGGAAATAATAGAATCAGGATTATCAGGTCTTAGTTCCTCAATGAGGTTCAAAGAAAGGACTCTAGGCTCTGCAGTCGAACGTGAAGAACAGAAAGTTGTTGAGACATCTGTTTTCAAGCTTGGGGACGGTGATCGTATCGCTACAAGAGAAAGGGACATACGTCAAGGAATTCAGTTGGCTACCACATTGGAACGAATTGAGAAGAAATTTTTTATCACGAACCCAAGACTTCCTGATAATCCTATTATATTTGCATCTCAAAGGTTTCTTCATTCCACAGAATACACGTGTGAAGAAGTTCTAGGGAGAAACTTTTGGTTTCTTCAGGGACTTGAAACAGATCAAGTAACTGTTTCAAAGATAAACGATGCCATTGAAGAGCAAAGAGAAATCACTCTTCAGATGATCAACTATACAAAGAGTGGAAAAAAGTTTTTGAATTTGTTCCACTTACAACCCGTGTATGATCAAAAGAAGGGCGAGCTTCAATATTTCATTGGCGTGCTACTTCATCTAAAACGTTCGAAAGACTGGCTTTTAGATCAGATGAAGCATGAACGAACTAAGCTGGTCAAAGATATAGCAGAAAGTGTTGACCGGGCTGTTCGAGAACTTCCCGATGCCAACTTGAAACCAAGTAATTTCTGGGCAATCTACTGTCAGCCAGTCTTACCAAGGCCTCACAAGAAGTACAGTCCTTCCTGGATAGCCATACAAAAGATTACCAGTCATGGTGAAAAGATAGGACTCCATCATTTTAAGCCAATAAAACCTCTGGGTTTTGGAGACATTGGAAGTGTTCATTTGGTAGAACTGAATGGAACAGGTGAACTCTTTGCAATGAAGGTTATAGAGAAGTCAGTAATATTAAATCGTAACAAGGTTCACCGAGCATGCATGGAAAGGGAAATCATATCACTTTTGGATCATCCTTTCATGCCAACACTATACTCTTCATTTCAGACACGTACACACATTTTTCTGATAATGGACTTCTGCCCGGGCGGAGAGTTATTTACGTTTCTTGACAATCAGCCAATGAAAATGTTTAAAGAGGAAGCTGCTGGGTTCTATGCTGCAGAAGTTGTCATTGCTTTAGAGTACCTTCACTGTTTAGGTATTGTCTACAGGGACCTAAAACCCGAAAACATTCTACTCCAAAAAGACGGACATATCGTCCTCACTGATTTCGATTTATCATTTAAGACATCGAACATACAAACCACAAAATCTCCACCCCGGAAAAGGATTAAGGGATCTTGGCATAGATTGGTGCCGACATTCGTTGCTGAACCGATTGTAGAACTGAATTCATTCGTAGGAACTGAAGAGTACATTGCTCCTGAGATCATTATGGGAGCTGGCCATAATAGTTCTATTGACTGGTGGACTCTTGGTATTTTGCTGTATGAAATGCTCTATGGTCGCACACCCTTCAAAGGCAAGAACAGGAAGAAAACCTTCTCCAATATTTTGTTCAAGGACTTAACCTTTCCCCTTAGTATTAAGGTGAGTCTTGCAGGAAAGCAGCTGATTGATGCACTACTACAGAGAGACCCTGCACGTCGTCTAGGATCAAGTACCGGTTCCGATGAAATCAAACGACATCCATTTTTCCGTCATATAAATTGGCCTAAAATACGAACAATGACTCCACCATCAACAGAAGTAGCCCTTCAACTATTTGAGAGAGATCCGAAGGCTAATGATTTGAAGTGGGAAGATGGAGTGCTCAGTCATTCAATAGGCTCTGATATTTTCTGA 2811 41.37 MMFSNRKRSLLRKISPLELLPCSIFRTRAREKDQKMDEKSETKEPSRSNLSYPSHQISPTEKRTPIEVFQVPESLGDDHSKGERDATHDQVGEKSTVTSFCPAASMKASKKWMAFEGENLDITKTYTKSFSGSFGSSFTELLETTMTKKTAEKNKIGDLSSLTYVISDATKPDCPIVFASDRFLAMTGYTLEELIGRNCRFLQGPETDKNEVAKIRDAIGKGNSYCGKLLNYKKNGTPFWNLLTVGPVKDSHGNIIKYIGMQVEIGKNTEEKEKSTRSMSMTEVQAEKVIRSIEVEAAKSLRSYVQSKRHDADRKHEEPETTGKNTSTADNQKARLDLKNAPSYFNSYEEIIESGLSGLSSSMRFKERTLGSAVEREEQKVVETSVFKLGDGDRIATRERDIRQGIQLATTLERIEKKFFITNPRLPDNPIIFASQRFLHSTEYTCEEVLGRNFWFLQGLETDQVTVSKINDAIEEQREITLQMINYTKSGKKFLNLFHLQPVYDQKKGELQYFIGVLLHLKRSKDWLLDQMKHERTKLVKDIAESVDRAVRELPDANLKPSNFWAIYCQPVLPRPHKKYSPSWIAIQKITSHGEKIGLHHFKPIKPLGFGDIGSVHLVELNGTGELFAMKVIEKSVILNRNKVHRACMEREIISLLDHPFMPTLYSSFQTRTHIFLIMDFCPGGELFTFLDNQPMKMFKEEAAGFYAAEVVIALEYLHCLGIVYRDLKPENILLQKDGHIVLTDFDLSFKTSNIQTTKSPPRKRIKGSWHRLVPTFVAEPIVELNSFVGTEEYIAPEIIMGAGHNSSIDWWTLGILLYEMLYGRTPFKGKNRKKTFSNILFKDLTFPLSIKVSLAGKQLIDALLQRDPARRLGSSTGSDEIKRHPFFRHINWPKIRTMTPPSTEVALQLFERDPKANDLKWEDGVLSHSIGSDIF 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7872965 7885011 - CmaCh19G008290.1 Cma19g00829 315517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00829 936 CDD PAS 427 521 IPR000014 -
Cma19g00829 936 MobiDBLite consensus disorder prediction 304 323 - -
Cma19g00829 936 SUPERFAMILY Protein kinase-like (PK-like) 579 910 IPR011009 -
Cma19g00829 936 Gene3D Transferase(Phosphotransferase) domain 1 686 902 - -
Cma19g00829 936 CDD STKc_phototropin_like 600 902 - -
Cma19g00829 936 ProSiteProfiles PAC domain profile. 223 277 IPR000700 -
Cma19g00829 936 Gene3D Phosphorylase Kinase; domain 1 601 685 - -
Cma19g00829 936 MobiDBLite consensus disorder prediction 74 91 - -
Cma19g00829 936 SMART pac_2 481 524 IPR001610 -
Cma19g00829 936 SMART pac_2 226 268 IPR001610 -
Cma19g00829 936 TIGRFAM sensory_box: PAS domain S-box protein 176 273 IPR000014 -
Cma19g00829 936 Gene3D PAS domain 164 329 - -
Cma19g00829 936 SMART serkin_6 602 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00829 936 Gene3D PAS domain 393 554 - -
Cma19g00829 936 ProSiteProfiles Protein kinase domain profile. 602 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00829 936 CDD PAS 176 265 IPR000014 -
Cma19g00829 936 PANTHER BNAC03G12530D PROTEIN 162 935 - -
Cma19g00829 936 Pfam PAS domain 170 265 IPR000014 -
Cma19g00829 936 Pfam PAS domain 427 518 IPR000014 -
Cma19g00829 936 SUPERFAMILY PYP-like sensor domain (PAS domain) 170 263 IPR035965 -
Cma19g00829 936 MobiDBLite consensus disorder prediction 46 63 - -
Cma19g00829 936 MobiDBLite consensus disorder prediction 28 94 - -
Cma19g00829 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Cma19g00829 936 PANTHER FLIPPASE KINASE 1-RELATED 162 935 - -
Cma19g00829 936 ProSiteProfiles PAS repeat profile. 176 222 IPR000014 -
Cma19g00829 936 Pfam Protein kinase domain 604 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00829 936 MobiDBLite consensus disorder prediction 28 45 - -
Cma19g00829 936 MobiDBLite consensus disorder prediction 304 335 - -
Cma19g00829 936 SUPERFAMILY PYP-like sensor domain (PAS domain) 420 517 IPR035965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00309 Cma19g00829 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00829 Cma-Chr19:7872965 Cma20g00692 Cma-Chr20:3167759 0 dispersed
Cma19g00829 Cma-Chr19:7872965 Cma02g00309 Cma-Chr2:1464696 5.77E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69344 PF00069 Pkinase 2.50E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00829 K20715 - csv:101213364 1366.67