Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00837 ATGGGTTATATGTGTGATTTCTGTGGGCAACAAAGGTCGTTTGTTTACTGTCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCATTCTGCTAACGCCTTGTCGAGGCGACACTCAAGAACGTTGTTATGTGATCGCTGTCATTCCCAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAACTGTGATTACATGGGGCATAGCTCATCCGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCGGACTGCCCGACAGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTGGATCTCCCTTCTGGAAGCGATGCTTGCGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAACGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTCGATGAAACCAACGAATTCCCAAGTGGGGATAAATCGATTTGGTTCGCGTCCTCTTCGGCGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTACAGGTGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAATTCGACATTGACGATGACTTCTACGAGAGTTTGAATATGGATGAAGATTTGAATATTGAAAATTATGAAGAACTATTTGGTGTATCCCTCAGTTATTCTGAAGAATTGTTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATCAAAAGCTTAGCTGCTGCTAAATCTGGTTGCGCTGGTGCGACTGATGCAAAGGGGCCGTCAGGTTTAGCTAATAATATGATGCAGCCTGCAAGCAGTAATGCAGCATCAGCAGACTCTGTGATGAGTGCGAAGACTGACCCGATTCTTTGTTATAACAATAAGCAAGAGCATTCCAGTCGATCGTTTTCTGGCATGACTGGAGAGAGTAGCGCAGGCGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTGATGGGAGAGCCTCCATGGTGTTCTATGGCTACAGAGAGTTCCTTCCAATCATCTAATCGTAGCGATGCTGTAATGCGCTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTGCGGGCCGATACTCGAAGACGGGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCGATGAGTCAAACCAGAAGCTACTGA 1236 44.98 MGYMCDFCGQQRSFVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFPSGDKSIWFASSSAPQYLSKPHIMDQPITTGATSPKLHYPGTKGPEFDIDDDFYESLNMDEDLNIENYEELFGVSLSYSEELLENGGIDSLFRIKSLAAAKSGCAGATDAKGPSGLANNMMQPASSNAASADSVMSAKTDPILCYNNKQEHSSRSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPMSQTRSY 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7927917 7931464 + CmaCh19G008370.1 Cma19g00837 315525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00837 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma19g00837 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Cma19g00837 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Cma19g00837 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cma19g00837 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma19g00837 411 CDD Bbox1_BBX-like 5 47 - -
Cma19g00837 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Cma19g00837 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00837 - - - csv:101216326 732.635
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00242 Cma19g00837 CCT
Cma19g00837 Cma20g00703 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00837 Cma-Chr19:7927917 Cma20g00636 Cma-Chr20:2965397 5.89E-64 dispersed
Cma11g01303 Cma-Chr11:8677273 Cma19g00837 Cma-Chr19:7927917 0 wgd
Cma19g00837 Cma-Chr19:7927917 Cma02g00242 Cma-Chr2:1075294 2.21E-176 wgd
Cma19g00837 Cma-Chr19:7927917 Cma20g00703 Cma-Chr20:3247766 1.14E-175 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma12g00377 CCT 6 333 C2C2-CO-like Transcription Factor Family AT5G15850 50.4 2.5e-45 180.3
Cma12g00377 CCT 4 333 C2C2-CO-like Transcription Factor Family AT3G02380 50.6 1.5e-42 171.0
Cma05g00338 CCT 1 337 C2C2-CO-like Transcription Factor Family AT5G24930 60.9 5.3e-83 305.4
Cma12g00377 CCT 1 333 C2C2-CO-like Transcription Factor Family AT5G24930 59.2 1.9e-77 287.0
Cma11g00415 CCT,CST 20 371 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 2.5e-56 216.9
Cma10g00418 CCT,CST 75 429 C2C2-CO-like Transcription Factor Family AT5G24930 50.1 1.5e-53 207.6
Cma11g00415 CCT,CST 5 371 C2C2-CO-like Transcription Factor Family AT5G57660 50.3 3.2e-64 243.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 55.5 3.2e-91 332.8
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT3G07650 54.0 8.1e-87 318.2
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT3G07650 54.4 8.1e-87 318.2
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 52.9 1.1e-83 307.8
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma02g00242 CCT,CST 79 486 C2C2-CO-like Transcription Factor Family AT5G48250 56.0 1.8e-86 317.0
Cma20g00703 CCT,CST 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 54.7 2.4e-86 316.6
Cma19g00837 CCT 1 411 C2C2-CO-like Transcription Factor Family AT5G48250 54.4 3.4e-85 312.8
Cma11g01303 . 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 53.6 6.7e-81 298.5
Cma11g01083 . 1 199 C2C2-CO-like Transcription Factor Family AT1G75540 56.7 4.4e-52 202.6
Cma19g00687 CCT,ECH 1 206 C2C2-CO-like Transcription Factor Family AT1G75540 52.9 1.7e-48 190.7
Cma04g00659 CST 1 203 C2C2-CO-like Transcription Factor Family AT1G78600 54.7 3.7e-56 216.1
Cma16g00606 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 61.4 7.6e-56 214.2
Cma07g00442 CST 1 132 C2C2-CO-like Transcription Factor Family AT2G21320 69.7 4.1e-49 191.8
Cma03g00703 CST 1 109 C2C2-CO-like Transcription Factor Family AT2G21320 78.9 1.0e-47 187.2
Cma16g00606 . 1 186 C2C2-CO-like Transcription Factor Family AT4G38960 64.0 1.5e-57 219.9
Cma07g00442 CST 1 151 C2C2-CO-like Transcription Factor Family AT4G38960 66.9 1.3e-50 196.8
Cma03g00703 CST 1 143 C2C2-CO-like Transcription Factor Family AT4G38960 65.0 2.8e-48 189.1
Cma11g01083 . 1 197 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 1.5e-52 203.8
Cma19g00687 CCT,ECH 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 55.6 6.7e-50 194.9
Cma12g00429 CCT,CST,ECH 26 231 C2C2-CO-like Transcription Factor Family AT4G39070 50.5 2.5e-44 176.4
Cma05g00283 CCT,CST,ECH 1 206 C2C2-CO-like Transcription Factor Family AT4G39070 51.2 4.2e-44 175.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36919 PF06203 CCT 2.70E-16 CL0281 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00837 Cma_Chr19 FPKM 6.199626 6.248291 12.372557 12.529219 9.053502 9.257198 12.534588 15.139998 15.407597 15.925009