Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00837 ATGGGTTATATGTGTGATTTCTGTGGGCAACAAAGGTCGTTTGTTTACTGTCGATCCGATGCTGCAGCTTTGTGCTTATCTTGTGACCGTAATGTTCATTCTGCTAACGCCTTGTCGAGGCGACACTCAAGAACGTTGTTATGTGATCGCTGTCATTCCCAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAACTGTGATTACATGGGGCATAGCTCATCCGCCTCCATTTCATCTCGAAAGAGGCAACCAATCAATTGTTACTCGGACTGCCCGACAGCTGCGGAGCTCTCATCTATCTGGTCATTTGTTCTGGATCTCCCTTCTGGAAGCGATGCTTGCGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAACGCCTGGGGCCCTGATGATAAAGCTGGTCAAAATGTATCTGGTGTCGATGAAACCAACGAATTCCCAAGTGGGGATAAATCGATTTGGTTCGCGTCCTCTTCGGCGCCTCAATATTTATCCAAGCCTCACATTATGGACCAACCAATTACTACAGGTGCAACTTCACCCAAGTTGCACTATCCTGGAACAAAAGGTCCTGAATTCGACATTGACGATGACTTCTACGAGAGTTTGAATATGGATGAAGATTTGAATATTGAAAATTATGAAGAACTATTTGGTGTATCCCTCAGTTATTCTGAAGAATTGTTAGAGAATGGTGGTATTGATAGCTTGTTTAGGATCAAAAGCTTAGCTGCTGCTAAATCTGGTTGCGCTGGTGCGACTGATGCAAAGGGGCCGTCAGGTTTAGCTAATAATATGATGCAGCCTGCAAGCAGTAATGCAGCATCAGCAGACTCTGTGATGAGTGCGAAGACTGACCCGATTCTTTGTTATAACAATAAGCAAGAGCATTCCAGTCGATCGTTTTCTGGCATGACTGGAGAGAGTAGCGCAGGCGAACATCAAGACTGTGGAGCTTCATCAATGCTTCTGATGGGAGAGCCTCCATGGTGTTCTATGGCTACAGAGAGTTCCTTCCAATCATCTAATCGTAGCGATGCTGTAATGCGCTACAAGGAAAAGAAGAAAGCTCGAAAGTTTGAAAAGAAGGTGAGGTATGCCTCTCGCAAAGTGCGGGCCGATACTCGAAGACGGGTCAAGGGGCGCTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCGATGAGTCAAACCAGAAGCTACTGA 1236 44.98 MGYMCDFCGQQRSFVYCRSDAAALCLSCDRNVHSANALSRRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYMGHSSSASISSRKRQPINCYSDCPTAAELSSIWSFVLDLPSGSDACEQELGLMSIAENSAVNAWGPDDKAGQNVSGVDETNEFPSGDKSIWFASSSAPQYLSKPHIMDQPITTGATSPKLHYPGTKGPEFDIDDDFYESLNMDEDLNIENYEELFGVSLSYSEELLENGGIDSLFRIKSLAAAKSGCAGATDAKGPSGLANNMMQPASSNAASADSVMSAKTDPILCYNNKQEHSSRSFSGMTGESSAGEHQDCGASSMLLMGEPPWCSMATESSFQSSNRSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPMSQTRSY 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7927917 7931464 + CmaCh19G008370.1 Cma19g00837 315525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00837 411 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cma19g00837 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 411 - -
Cma19g00837 411 ProSiteProfiles CCT domain profile. 354 396 IPR010402 GO:0005515
Cma19g00837 411 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Cma19g00837 411 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cma19g00837 411 CDD Bbox1_BBX-like 5 47 - -
Cma19g00837 411 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 411 - -
Cma19g00837 411 Pfam CCT motif 354 396 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00242 Cma19g00837 CCT
Cma19g00837 Cma20g00703 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00837 Cma-Chr19:7927917 Cma20g00636 Cma-Chr20:2965397 5.89E-64 dispersed
Cma11g01303 Cma-Chr11:8677273 Cma19g00837 Cma-Chr19:7927917 0 wgd
Cma19g00837 Cma-Chr19:7927917 Cma02g00242 Cma-Chr2:1075294 2.21E-176 wgd
Cma19g00837 Cma-Chr19:7927917 Cma20g00703 Cma-Chr20:3247766 1.14E-175 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36919 PF06203 CCT 2.70E-16 CL0281 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00837 - - csv:101216326 732.635