Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00854 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGACGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCGTCGGTTGATGTCAACATCGCAAGTTCGAGTAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACACTTTTTCGCTCACCGGGAGCTGCAGCGTTACAGAAAGCAGCTGATTATAAGGAAGTTAATCTTCTTAATCCTATACTAGTCCATTGTAAAACTTCTGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACATGGGATTAATTATAGATCTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTTGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCAATCGGACTTAGAACCTTATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGGCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTCGTGATGTCTATTACAATCAATGAGAGTGATAGTGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACTGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTAGTTGGAGTCACCCCCTCAGAGGCACAAATTAGAAATATAGCTGAATGGCTTCTCGAAGACCATAGCGGAAGTGCAGGTTTAAGTACCGATAGCCTTGTTGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCAGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCACTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTAGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAGCATCGAAATCAAACTCAAAACGTTTGGAATTCCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTCTAGGAGTATATATTATAGGGCAGGATGTTACGAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGTGATTACACAGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTGAAAGATCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACAGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAAAAGGACTGATTCAGAGGGTAAGATCACCGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTAAAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGTCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTATTGGGTTCATCGGACTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCGGGAACAATTATACAAGATTGTATATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGATGTCGTAATGAATCAAACCATGATTTTGAGCCGAGAGCGCCAGGTGAAGATCATTTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCGTCGTCTTCCGAACAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCGGTTCCTGGAATTCCTGCGCACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTAATTCCCCTTGGCCGAGCATATTGCTTAATAACGACGACAACAACGATGACAACGACTTTACTGTTCTACTCTCACTGCATGATTTACTTGAAGATGCCTTAACCAAAGAACGAGCCTTGACACTACTCGGGCGAGTAGTTTCAAGCTTCAAAGAATCAAAAGAGTCGAAAGTTGTAAAGACACGACGTCTTTATCGACCATCTCTAGAATGTCACAAATCCAAGAACTCTTTTGTAGTTCATTCCCGAAGTCGTCGATTTAGAAGTTTACATCAGAAACTCCAAAAATGCAGGCTTTATGGGATTGGGATGCAAGCACCTGAAATAATAAATAATACGAAAATGAATATGGATTTTGTTCAAACCAAAGCTTCAAACAATGGGGGATGTGATCAGTCGAGGATTCTAAAGCATGAAAGTGGAGCGTGA 3690 42.09 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNIASSSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADYKEVNLLNPILVHCKTSGKPFYAILHRVDMGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCQSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFRKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVHLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMLSLAVQGIEEKSIEIKLKTFGIPGHDGPVILEVNSCCSRDLNNNVLGVYIIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASKRTDSEGKITGVVFFLHVASSELKYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLLGSSDLNEEQKRLLKSNTLSREQLYKIVYDTDIQSIEECYIETNCREFNLGDVLDVVMNQTMILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVVFRTTPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLNSPWPSILLNNDDNNDDNDFTVLLSLHDLLEDALTKERALTLLGRVVSSFKESKESKVVKTRRLYRPSLECHKSKNSFVVHSRSRRFRSLHQKLQKCRLYGIGMQAPEIINNTKMNMDFVQTKASNNGGCDQSRILKHESGA 1229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8014444 8020904 + CmaCh19G008540.1 Cma19g00854 315542

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00854 1229 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cma19g00854 1229 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cma19g00854 1229 CDD PAS 625 731 IPR000014 -
Cma19g00854 1229 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Cma19g00854 1229 Gene3D PAS domain 601 745 - -
Cma19g00854 1229 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cma19g00854 1229 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cma19g00854 1229 TIGRFAM sensory_box: PAS domain S-box protein 761 868 IPR000014 -
Cma19g00854 1229 MobiDBLite consensus disorder prediction 1 23 - -
Cma19g00854 1229 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1091 - -
Cma19g00854 1229 Gene3D PAS domain 74 322 - -
Cma19g00854 1229 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Cma19g00854 1229 Gene3D - 937 1089 IPR036890 -
Cma19g00854 1229 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cma19g00854 1229 SUPERFAMILY GAF domain-like 199 395 - -
Cma19g00854 1229 SMART gaf_1 219 408 IPR003018 GO:0005515
Cma19g00854 1229 Gene3D - 200 559 IPR029016 -
Cma19g00854 1229 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cma19g00854 1229 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1087 IPR036890 -
Cma19g00854 1229 Pfam PAS fold 757 868 IPR013767 GO:0006355
Cma19g00854 1229 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cma19g00854 1229 PANTHER PHYTOCHROME C 1 1091 - -
Cma19g00854 1229 Gene3D PAS domain 760 873 - -
Cma19g00854 1229 CDD PAS 758 868 IPR000014 -
Cma19g00854 1229 ProSiteProfiles Histidine kinase domain profile. 897 1087 IPR005467 -
Cma19g00854 1229 SMART pas_2 616 682 IPR000014 -
Cma19g00854 1229 SMART pas_2 746 815 IPR000014 -
Cma19g00854 1229 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cma19g00854 1229 Gene3D - 403 576 IPR043150 -
Cma19g00854 1229 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cma19g00854 1229 SUPERFAMILY GAF domain-like 406 583 - -
Cma19g00854 1229 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 733 IPR035965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00854 - - - csv:101211915 1976.44
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00705 Cma-Chr12:3888331 Cma19g00854 Cma-Chr19:8014444 0 dispersed
Cma18g00452 Cma-Chr18:2495903 Cma19g00854 Cma-Chr19:8014444 0 dispersed
Cma19g00854 Cma-Chr19:8014444 Cma17g01443 Cma-Chr17:9486488 7.16E-07 dispersed
Cma19g00854 Cma-Chr19:8014444 Cma05g00948 Cma-Chr5:7645389 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g703 Blo02g00140 Blo15g00444 . . . . . . . Cmo19g00869 . . . . Sed05g2128 Cpe15g00685 . Bhi05g01475 Tan02g0490 Cmetu01g1663 Lac12g0396 . . . Cla02g00291 Cam02g0302 Cec02g0302 Cco02g0306 Clacu02g0294 Cmu02g0290 Cre02g0625 . . Cone8ag1368 Cone12ag1314 . Csa07g00253 . Cme01g00552 . . . . . . . . . . . . Cma19g00854 . Car19g00664 . . . . . . . . . . . . . . . . Lsi11g01345 . Chy01g00529 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma06g00120 . 5 1218 Histidine Kinase Gene Family AT2G17820 63.3 0.0e+00 1425.2
Cma16g01243 . 102 1255 Histidine Kinase Gene Family AT2G17820 64.9 0.0e+00 1414.8
Cma04g00016 . 28 1012 Histidine Kinase Gene Family AT2G01830 70.5 0.0e+00 1325.8
Cma15g00887 CST 20 979 Histidine Kinase Gene Family AT2G01830 72.0 0.0e+00 1303.5
Cma04g02142 CST 23 992 Histidine Kinase Gene Family AT2G01830 69.8 0.0e+00 1276.9
Cma17g01443 . 102 1060 Histidine Kinase Gene Family AT2G01830 52.7 7.7e-276 947.6
Cma11g01285 . 280 1223 Histidine Kinase Gene Family AT2G01830 53.8 1.9e-274 943.0
Cma20g00673 . 302 1245 Histidine Kinase Gene Family AT2G01830 52.9 7.7e-268 921.0
Cma08g00179 . 51 983 Histidine Kinase Gene Family AT2G01830 52.5 3.8e-267 918.7
Cma02g00221 . 329 1267 Histidine Kinase Gene Family AT2G01830 50.7 7.8e-260 894.4
Cma01g01683 CCT 1 992 Histidine Kinase Gene Family AT5G10720 57.2 4.8e-290 994.6
Cma09g00387 CCT 1 996 Histidine Kinase Gene Family AT5G10720 56.2 2.0e-288 989.2
Cma05g00948 . 1 1120 Histidine Kinase Gene Family AT1G09570 79.4 0.0e+00 1817.7
Cma12g00705 . 1 1114 Histidine Kinase Gene Family AT1G09570 71.0 0.0e+00 1617.8
Cma19g00854 . 18 1087 Histidine Kinase Gene Family AT1G09570 53.8 0.0e+00 1171.0
Cma14g01590 CST 35 1078 Histidine Kinase Gene Family AT1G09570 53.6 0.0e+00 1155.2
Cma06g01564 CST 29 1123 Histidine Kinase Gene Family AT1G09570 52.5 0.0e+00 1155.2
Cma14g01590 CST 13 1041 Histidine Kinase Gene Family AT2G18790 77.1 0.0e+00 1620.1
Cma06g01564 CST 28 1064 Histidine Kinase Gene Family AT2G18790 77.2 0.0e+00 1610.9
Cma13g00567 CST 3 1047 Histidine Kinase Gene Family AT2G18790 59.2 0.0e+00 1227.6
Cma18g00452 CST 31 1051 Histidine Kinase Gene Family AT2G18790 59.3 0.0e+00 1224.5
Cma05g00948 . 21 1054 Histidine Kinase Gene Family AT2G18790 53.4 0.0e+00 1087.0
Cma19g00854 . 26 1068 Histidine Kinase Gene Family AT2G18790 51.9 1.4e-313 1073.2
Cma12g00705 . 18 1048 Histidine Kinase Gene Family AT2G18790 50.8 6.5e-305 1044.3
Cma19g00854 . 12 1087 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1334.7
Cma06g01564 CST 29 1125 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1120.1
Cma05g00948 . 9 1114 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1111.7
Cma14g01590 CST 21 1080 Histidine Kinase Gene Family AT5G35840 50.8 0.0e+00 1092.8
Cma12g00705 . 9 1105 Histidine Kinase Gene Family AT5G35840 50.6 0.0e+00 1080.9
Cma06g01564 CST 32 1125 Histidine Kinase Gene Family AT4G16250 74.3 0.0e+00 1649.0
Cma14g01590 CST 30 1080 Histidine Kinase Gene Family AT4G16250 74.2 0.0e+00 1616.3
Cma13g00567 CST 29 1109 Histidine Kinase Gene Family AT4G16250 57.6 0.0e+00 1261.9
Cma18g00452 CST 38 1113 Histidine Kinase Gene Family AT4G16250 57.6 0.0e+00 1257.7
Cma05g00948 . 8 1115 Histidine Kinase Gene Family AT4G16250 53.1 0.0e+00 1137.1
Cma12g00705 . 11 1109 Histidine Kinase Gene Family AT4G16250 50.5 0.0e+00 1082.8
Cma19g00854 . 26 1087 Histidine Kinase Gene Family AT4G16250 51.5 1.9e-312 1069.3
Cma13g00567 CST 12 1110 Histidine Kinase Gene Family AT4G18130 62.9 0.0e+00 1367.8
Cma18g00452 CST 15 1130 Histidine Kinase Gene Family AT4G18130 61.5 0.0e+00 1356.3
Cma06g01564 CST 40 1123 Histidine Kinase Gene Family AT4G18130 57.2 0.0e+00 1244.6
Cma14g01590 CST 38 1078 Histidine Kinase Gene Family AT4G18130 57.3 0.0e+00 1215.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00854 Cma_Chr19 FPKM 15.328998 18.781408 12.370538 13.794206 11.354842 12.096239 12.255798 8.709895 7.104306 8.174102