Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00854 ATGTCTTCAATGACAACAAATAAGACTGTATGTTCTAAGACCAGTGGCGACCGATCAAAACATGGAGCTCATGTGGTTGCACAAACTTCAATTGACGCAAAGCTTCAAGTAGACTTTGAAGGTTCTGAAAGGTTGTTTGATTACTCTGCGTCGGTTGATGTCAACATCGCAAGTTCGAGTAGCAATGTTCATGCCACCACTGTACAATCATACCTTCAGAACATTCAGAGAGGAAGTCTAGTTCAACCATTTGGTTGTATGATTGCTGTGGATGGGGAAAACTTGTCTGTTCTTGCATATAGTGAAAATGCCCCTGAGATGTTGGACTTGGCCCCACATGCTGTGCCGAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACGGATGTACGAACACTTTTTCGCTCACCGGGAGCTGCAGCGTTACAGAAAGCAGCTGATTATAAGGAAGTTAATCTTCTTAATCCTATACTAGTCCATTGTAAAACTTCTGGTAAACCATTTTATGCAATTTTGCATCGAGTAGACATGGGATTAATTATAGATCTGGAACCAGTGAATCCAGCTGATGTGCCAGTGACTGCAGCTGGGGCATTGAAATCTTATAAGCTTGCAGCTAAAGCCATCCCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGCTAAGGAGGTTAGCGATTTGACAGGTTATGATCGAGTAATGGTGTATAAATTCCATGATGATGAGCATGGAGAAGTTGTAGCTGAGTGCTGTCAATCGGACTTAGAACCTTATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTTTTTTTGAAGAATAAAGTTAGGATGATTTGTGATTGTTTGGCACCTCCAGTTAAGGTGCTTCAAGACAGGAGATTGACTCAGCCATTAAGTCTATGTGGGTCTGCATTGAGGGCTCCTCACGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTCGTGATGTCTATTACAATCAATGAGAGTGATAGTGAATCCGAGAATGATCAAGAAAAGGATAGAAAGTTGTGGGGTTTAGTAGTTTGTCATCACACAAGTCCTAGGTTTGTGCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTTTTTGGTATACAGATTAATAAAGAAGTGGAGTTGCAAACTCAGTTGAAGGAGAAACATATATTGCGAATTCAAACTGTTCTTTGTGATATGCTGCTAAGAGATACTCCGGTAGGAATCGTTACCCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGTGCTGCCTTATATTTCAGAAAGAAATTTTGGTTAGTTGGAGTCACCCCCTCAGAGGCACAAATTAGAAATATAGCTGAATGGCTTCTCGAAGACCATAGCGGAAGTGCAGGTTTAAGTACCGATAGCCTTGTTGAAGCTGGTTTCTATGGTGCTTCTGCTCTTGGTGATGAGGTTTGTGGAATGGCTGCTGTTAGGATCACCTCTAAGGATTTCCTTTTCTGGTTTCGGTCACATATGGCTAAAGAAATCAGGTGGGGTGGTGCAAAACATGACCCAGGTGACCAGGACGATGGAAGGAATATGCATCCGAGATCATCATTCAAGGCTTTCCTGGAAGTGGTGAAGCGGCGTAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCGCTGCAATTAATATTACGAGGTTCTTTACAAGATGAAGAAGTTGAAGAAGAATGCAAGGTGATTACAAACGTCCCGTTAGTCGATGAGAAGACACAACAGTTGGATGAACTGCGTGTCATCACAAACGAGATGGTTCACTTGATCGAGACAGCTGCAGTGCCTATCTTGGCTGTAGATGTTTTCGGCAAGATCAATGGTTGGAACTCGAAAGCCACTGAGCTTACAGGATTAGCTATCCAGCAAGCCATTGGCATGCCCTTAGTTGATTGTCTGGTGAATGATTCTATTAAGGTGGTAAAGAAAATGCTGTCCTTGGCCGTTCAAGGTATTGAAGAGAAGAGCATCGAAATCAAACTCAAAACGTTTGGAATTCCGGGACACGATGGTCCAGTGATCTTAGAAGTTAATTCGTGCTGTAGCCGAGACCTAAACAATAATGTTCTAGGAGTATATATTATAGGGCAGGATGTTACGAAGAAGAAACTGATAATGAACCAATACACGCAAATCCAAGGTGATTACACAGGGATTATGCGAAATCCATCTGCACTTATTCCTCCGATTTTCATGACCGATGACGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGTAGAGATGACAAATAGGATGCTTCTTGGGGAGGTTTTCACGCTCGAAAGCTTCGGCTGTCGTGTGAAAGATCAGACATTGACCAAGCTTAGGATACTACTGCATAGAGTAATTTCGGGCCAGGATACAGAGAAATTTTTGTTTAAGTTCTGTGATCGTGAAGGAAATTACGTTGAAACACTGCTCACTGCAAGCAAAAGGACTGATTCAGAGGGTAAGATCACCGGGGTCGTCTTCTTCTTGCACGTGGCTAGCTCGGAACTAAAATATGCCTTGGAGATGCAACGGATGTCAGAACAAGCTACAGCTGATAATCTCCATAAGTTGGCATATCTACGTCAAGAAATTCGAAAACCACTCGACGGAATTACATTTATGCAGAATCTATTGGGTTCATCGGACTTGAACGAAGAGCAAAAGCGGCTACTTAAATCGAACACTTTGAGTCGGGAACAATTATACAAGATTGTATATGATACTGATATCCAGAGTATTGAGGAGTGTTACATAGAAACTAACTGTAGGGAATTCAACCTTGGAGATGTTCTTGATGTCGTAATGAATCAAACCATGATTTTGAGCCGAGAGCGCCAGGTGAAGATCATTTGTGAATCACCTGCTGATGTATCATCTCTGCACTTATATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGAATCATCCGTCGTCTTCCGAACAACTCCAAGGAAGGAGCGTATCGGGAAGGGAATCCACATTCTTCATCTTGAATTCAGGATCATTCATCCGGTTCCTGGAATTCCTGCGCACTTAATCCAAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATCAGCCAGAAGCTTAATTCCCCTTGGCCGAGCATATTGCTTAATAACGACGACAACAACGATGACAACGACTTTACTGTTCTACTCTCACTGCATGATTTACTTGAAGATGCCTTAACCAAAGAACGAGCCTTGACACTACTCGGGCGAGTAGTTTCAAGCTTCAAAGAATCAAAAGAGTCGAAAGTTGTAAAGACACGACGTCTTTATCGACCATCTCTAGAATGTCACAAATCCAAGAACTCTTTTGTAGTTCATTCCCGAAGTCGTCGATTTAGAAGTTTACATCAGAAACTCCAAAAATGCAGGCTTTATGGGATTGGGATGCAAGCACCTGAAATAATAAATAATACGAAAATGAATATGGATTTTGTTCAAACCAAAGCTTCAAACAATGGGGGATGTGATCAGTCGAGGATTCTAAAGCATGAAAGTGGAGCGTGA 3690 42.09 MSSMTTNKTVCSKTSGDRSKHGAHVVAQTSIDAKLQVDFEGSERLFDYSASVDVNIASSSSNVHATTVQSYLQNIQRGSLVQPFGCMIAVDGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADYKEVNLLNPILVHCKTSGKPFYAILHRVDMGLIIDLEPVNPADVPVTAAGALKSYKLAAKAIPKLQSLPSGNISLLCEVLAKEVSDLTGYDRVMVYKFHDDEHGEVVAECCQSDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINESDSESENDQEKDRKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLKEKHILRIQTVLCDMLLRDTPVGIVTQSPNIMDLVKCDGAALYFRKKFWLVGVTPSEAQIRNIAEWLLEDHSGSAGLSTDSLVEAGFYGASALGDEVCGMAAVRITSKDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRNMHPRSSFKAFLEVVKRRSQPWEDVEMDAIHSLQLILRGSLQDEEVEEECKVITNVPLVDEKTQQLDELRVITNEMVHLIETAAVPILAVDVFGKINGWNSKATELTGLAIQQAIGMPLVDCLVNDSIKVVKKMLSLAVQGIEEKSIEIKLKTFGIPGHDGPVILEVNSCCSRDLNNNVLGVYIIGQDVTKKKLIMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRRVEMTNRMLLGEVFTLESFGCRVKDQTLTKLRILLHRVISGQDTEKFLFKFCDREGNYVETLLTASKRTDSEGKITGVVFFLHVASSELKYALEMQRMSEQATADNLHKLAYLRQEIRKPLDGITFMQNLLGSSDLNEEQKRLLKSNTLSREQLYKIVYDTDIQSIEECYIETNCREFNLGDVLDVVMNQTMILSRERQVKIICESPADVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKESSVVFRTTPRKERIGKGIHILHLEFRIIHPVPGIPAHLIQEMFDDNNDSSKEGLGLYISQKLNSPWPSILLNNDDNNDDNDFTVLLSLHDLLEDALTKERALTLLGRVVSSFKESKESKVVKTRRLYRPSLECHKSKNSFVVHSRSRRFRSLHQKLQKCRLYGIGMQAPEIINNTKMNMDFVQTKASNNGGCDQSRILKHESGA 1229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8014444 8020904 + CmaCh19G008540.1 Cma19g00854 315542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00854 1229 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 729 749 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 617 633 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 636 651 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 PRINTS Phytochrome signature 709 726 IPR001294 GO:0006355|GO:0009584
Cma19g00854 1229 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Cma19g00854 1229 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Cma19g00854 1229 CDD PAS 625 731 IPR000014 -
Cma19g00854 1229 SUPERFAMILY PYP-like sensor domain (PAS domain) 761 865 IPR035965 -
Cma19g00854 1229 Gene3D PAS domain 601 745 - -
Cma19g00854 1229 Pfam GAF domain 220 398 IPR003018 GO:0005515
Cma19g00854 1229 TIGRFAM sensory_box: PAS domain S-box protein 621 736 IPR000014 -
Cma19g00854 1229 TIGRFAM sensory_box: PAS domain S-box protein 761 868 IPR000014 -
Cma19g00854 1229 MobiDBLite consensus disorder prediction 1 23 - -
Cma19g00854 1229 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1091 - -
Cma19g00854 1229 Gene3D PAS domain 74 322 - -
Cma19g00854 1229 Pfam Phytochrome region 411 585 IPR013515 GO:0006355|GO:0009584
Cma19g00854 1229 Gene3D - 937 1089 IPR036890 -
Cma19g00854 1229 Pfam PAS fold 71 186 IPR013654 GO:0006355
Cma19g00854 1229 SUPERFAMILY GAF domain-like 199 395 - -
Cma19g00854 1229 SMART gaf_1 219 408 IPR003018 GO:0005515
Cma19g00854 1229 Gene3D - 200 559 IPR029016 -
Cma19g00854 1229 ProSiteProfiles PAS repeat profile. 747 799 IPR000014 -
Cma19g00854 1229 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 958 1087 IPR036890 -
Cma19g00854 1229 Pfam PAS fold 757 868 IPR013767 GO:0006355
Cma19g00854 1229 Pfam PAS fold 617 731 IPR013767 GO:0006355
Cma19g00854 1229 PANTHER PHYTOCHROME C 1 1091 - -
Cma19g00854 1229 Gene3D PAS domain 760 873 - -
Cma19g00854 1229 CDD PAS 758 868 IPR000014 -
Cma19g00854 1229 ProSiteProfiles Histidine kinase domain profile. 897 1087 IPR005467 -
Cma19g00854 1229 SMART pas_2 616 682 IPR000014 -
Cma19g00854 1229 SMART pas_2 746 815 IPR000014 -
Cma19g00854 1229 ProSiteProfiles PAS repeat profile. 614 684 IPR000014 -
Cma19g00854 1229 Gene3D - 403 576 IPR043150 -
Cma19g00854 1229 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Cma19g00854 1229 SUPERFAMILY GAF domain-like 406 583 - -
Cma19g00854 1229 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 733 IPR035965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00705 Cma-Chr12:3888331 Cma19g00854 Cma-Chr19:8014444 0 dispersed
Cma18g00452 Cma-Chr18:2495903 Cma19g00854 Cma-Chr19:8014444 0 dispersed
Cma19g00854 Cma-Chr19:8014444 Cma17g01443 Cma-Chr17:9486488 7.16E-07 dispersed
Cma19g00854 Cma-Chr19:8014444 Cma05g00948 Cma-Chr5:7645389 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00854 - - csv:101211915 1976.44