Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00871 ATGCTTCTTTCTCCGGGTCGTTCTCCCCGGCATATCTCAGCCCCTTCGCCGTCGACGGTTTCCGAGAATTCGATCCAGAATCCGCGGAGTTCGTCTTCGATTACGCCTCAGAGCTCTAGGAAACATCCCGAGGTTCTTGATGAGGATACTTATGTGGAAGCGATTGAGAAGATTATTGAGCGTGATTACTTTCCCGACATTTCAAAACTCAGAGATCGTATGGATTGGCTTGAAGCGATTAAAAGTGGAGATCCGATTCTAATTCGAGATGCGCAGTTGAAGATCATGGAGCGTCGTGGCCAGAAGGTTAAACGTTTGAATCCTGATGGTAAGTCCCGAACGCCTGGTTCCACTTTTATGAGAAATTTTACCCCGTTTGATGAATTTGAGGGCAAAACACCGAAAACCCCCGGCGTTGGTGGAAGTGGAATTTCCGGTGAAACGGAGGAGGGTGATTGTAACGGCAAGGTGATGGATGAATCGCTGTCGCTTGATGAGTTTTTTAGGCAATATACGAGCGAGGATAATTTAAGTTTTTCAAAAATTCTGGACAAAGATAATAGGAAGAGAAAGGAGAGATACGCGTATTTGACGGAGGGTGAGAAGGAGGATGTGAAATCAATTGAGGATGTGAAGAGAGATAGAATAACTGATGGTTATGGGACCTCCGATCAGCCGCCGAGTACCTTGGAAGGATGGAACTACACTGCAAAAAATTTATTAATGTATCATCCTTCCGATAGAGGTGAGGCTCCACTGACAGATGAAGAAAGGGCTGTTAGATTGAAGGGCTTAACCAAAGAAATTAGCCGAGCAAGCACTCGGTTCCACGGTAAATTGATCGATGCGAGACCAAAAGACGATGGTACAGTTGAAGTGCTCTATACCCCTGTGGCTGGAACTACCCCACATCCTGTGATGGATCGAAATGGGGATCGATTGAAGAAGTACGATTTGGGGGATATGAGGAAGACCCCAAATCCATTTTATATAGAATCGGGGAAGAAGGCTGAGAATGGCTACAGTTTTGTCCGTACACCGTCCCCTGCCCCTGGTGTTGATGAATCTCCATTTATTACATGGGGTGAAATTGAAGGTACACCCTTAAGACTAGATCCTGAGGAGACGCCTATCGACATCGGTGGTACTGTTGATGGGCCACGATTTAATATTCCATGTCCACCTGCTCGAGATCAGAAGGCTCACTCACTCTCAAGGGAGGCCGCACGAAAGCTAAGGGAGAAATCAAAGATGTTTCAGAAGCCACCATTGCCATCACCTGTTAGAGGAGGAAGTGCTAGCCCAAGTGTTCGAAGGACGCTCTCTCCAGCCGCCCAGAAATTTGTAAGGAATGCAATAGCCAAGTCGTCATCTTCATTTGATGAAACTCTCCGTGCCAGTTACCGAGGTGGAAGCCCGAGTTCTGCAACGCCTAAAAGTGGGAGGAGTTTGTCTAGGTTTGCTAGAGATGGGAGCTTTGGCTCAAGGTCACCTTCTGTTAAAGAAGATTCTAATCCTGCTTGGTGA 1527 46.82 MLLSPGRSPRHISAPSPSTVSENSIQNPRSSSSITPQSSRKHPEVLDEDTYVEAIEKIIERDYFPDISKLRDRMDWLEAIKSGDPILIRDAQLKIMERRGQKVKRLNPDGKSRTPGSTFMRNFTPFDEFEGKTPKTPGVGGSGISGETEEGDCNGKVMDESLSLDEFFRQYTSEDNLSFSKILDKDNRKRKERYAYLTEGEKEDVKSIEDVKRDRITDGYGTSDQPPSTLEGWNYTAKNLLMYHPSDRGEAPLTDEERAVRLKGLTKEISRASTRFHGKLIDARPKDDGTVEVLYTPVAGTTPHPVMDRNGDRLKKYDLGDMRKTPNPFYIESGKKAENGYSFVRTPSPAPGVDESPFITWGEIEGTPLRLDPEETPIDIGGTVDGPRFNIPCPPARDQKAHSLSREAARKLREKSKMFQKPPLPSPVRGGSASPSVRRTLSPAAQKFVRNAIAKSSSSFDETLRASYRGGSPSSATPKSGRSLSRFARDGSFGSRSPSVKEDSNPAW 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8074047 8075573 + CmaCh19G008710.1 Cma19g00871 315559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00871 508 MobiDBLite consensus disorder prediction 11 40 - -
Cma19g00871 508 MobiDBLite consensus disorder prediction 1 47 - -
Cma19g00871 508 PANTHER ES-2 PROTEIN - RELATED 1 498 IPR019148 -
Cma19g00871 508 PANTHER BNAA05G29860D PROTEIN 1 498 - -
Cma19g00871 508 MobiDBLite consensus disorder prediction 413 508 - -
Cma19g00871 508 MobiDBLite consensus disorder prediction 451 482 - -
Cma19g00871 508 Pfam Nuclear protein Es2 43 448 IPR019148 -
Cma19g00871 508 MobiDBLite consensus disorder prediction 105 153 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00216 Cma19g00871 CCT
Cma19g00871 Cma20g00669 CCT
Cma02g00216 Cma19g00871 ECH
Cma19g00871 Cma20g00669 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01282 Cma-Chr11:8577940 Cma19g00871 Cma-Chr19:8074047 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00871 K13118 - csv:101212240 935.636