Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00903 | ATGGCACAGCTACCGCCGAAGATCCCAAATATGGCGACCAATTGGCCGGAATTTTCCCGTCAGAAAATCCCTTCAATGGAAACCTTTGCACCGACAACCACAACGGCGGTGGCGTTTGCTCACCAGAACCCTTCTTGGGTCGACGAGTTTCTCGATTTTTCTTCCGCTAGACGTGGGTCTCACCGGCGCTCCGTTAGTGATTCCATCACATTCCTTGAAATGCCAATGCTGGAGGAAGATTGCCGAGGCTCCACTGCGCCGCCACCGCCGCCGGGATCTGGCTCCGGCGACCGGAATGAATTTGATGGATTCGAAGACGAGCAATTCCTATCGATGTTTAACGACGAAATCTCCGCCGGCGTGGCGCCCACAGTGTCGTCGTCGAACCCCTCCACGCCGTCTGATCACAACAGCATTAACGACGAGAAAGATGCCCAAAACGACGGCAAGCAAAATCAGAACAAAAACGAAACCGACGAAGTACAAAGCCAACAGCAATCGGACACTCAAACACAATCCAATTCCACGGCAACGGCGGCTTCCACCGAACGAATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCTCAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTTTCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCACTAAAAAGAGAGATAGAGAGACTGAGGCAAGTATATCACCAGCAAAACATCAAGAAGACGGAAAATGCAGCGCCACCCGTCACGGCGACCACCGTGACGGACGGCAAGCTTTGTAATGTAGCCATGGCCTCTGTTCATTTCAGATCCCACAATCTCTTCACTGCCATCCCAATTGGAAGATCGGCAGCTAAGAACCCCAGAATTCAAGCTAATATAAAAACACAGCTCAAGTCTTCTAGAACCCAGAGGATAATGGAGGGCATATCAGTTTCAGGGGAGGTTGGTGGTGCTGGTGGAGCATACTCATACGATGCTTTGAAGAGGTTGGATCAAATTTGGTCCAGAATTTGCTCTGGCCAAGAAGCTCCAGAAGCCGCACAGGAAGTCGTCCGTCGTCTCTCTGGTGCGTTCAGCCGTTCCGATTTGGGAGAGAAAGCCACCGACACATTTGATGTGTTGGTTTGTGGAGGTACTTTGGGAGTGTTCATAGCCACAGCTTTAAGTTTGAAGGGTCTTCGTGTCGGTATAGTGGAAAGATATGTTCTGAAAGGGAGGAAACAAGAATGGAACATTTCAAGGAAAGAGCTGATAGAACTCGTTGAAGTTGGAGTATTAACAGAAGATGACATTGAACAAGCTACTGCTATGAAGTTTAATCCTAACAGATGTGCATTTGAAGGGAAAGGCGAAATCTGGGTTGAAGACATCCTCAATCTTGGTATCTCACCTGAGAAGCTTATAGAGATCGTGAAGAAACGTTTCATTTCTCTAGGTGGAGTCATCTTTGAGGGATGCAACGTTTCAAGCATTTGCATATACGATGATATGACTGTGATGCAACTCTCTGATGGGAACATTTTATCTTCTCAACTCACTATTGATGCAATGGGGAACTTTTCACCTGTGGTGAAACAGATAAGACGTGGGAGGAAGCCTGATGGTGTTTGTCTTGCTGTTGGATCATGTGCTCGTGGATTTAAGGATAACTCAACAAGTGATGTCATTTACAGCAGTTCATCCTTAAAAAAGGTCGGGATCTCAGAAGTTCAACTTTTCTGGGAGGCGTTTCCAGCCGGGTCGGGGCCTGTGGATCGAACTACTTACATGTTTACATATATCGATCCTCAACCAGGGTCACCTAAACTTGAAGACCTTTTAGAAGAATACTGGGATTTGATGCCAAAATATCAGGGAGTCTCTCTTGATGACTTGAAGATATTGAGAATTTTTTATGGCATCTTTCCGACTTATCGTGACAGCCCGCTGCCAGCTGCTTTTGATCGTGTTCTACAGTTTGGAGATGCAAGTGGCATTCAGTCACCCGTTTCATTTGGTGGATTTGGGAGCTTGACTAGGCACCTCGGGAGGTTGTCAACTGGGATATATGAAGCTGTAACAGGCAACTTCCTTGACTCTGATAGCTTATCACTGCTGAATCCTTACATGCCTAATTTAAGTAGTTCATGGTTGTTTCAAAGAGCTATGTCTGCAAAGCAACGATCAAACATTTCTCCATATTTTATCAATGAGCTTCTTCATGTAAACTTTCAGAGTATGCAGAGATTGGGGGATCCAGTGCTGAGGCCTTTCCTTCAGGATGTTGTGCAGTTTGTACCTCTTGCCCAGACCCTAGGTCTAGTTATGTTAACTAAACCTCAACTTCTTCCATTAATATACAAACAGGTAGGCATCCCAGTGTTGCTCGACTGGGCTGGACATTTCGGCATGCTTGGCTACTACACGATTCTCTCGACATTTGTTGATCCGATTATAAGGCCATTCCTAAGTTCACTAACACCAAAGATGAATTTCAAGTGGAAACGACAACTCGAGGCCTGGAAGTATGGAGCTGGTTTAGATTACAAGCTATGA | 2682 | 46.38 | MAQLPPKIPNMATNWPEFSRQKIPSMETFAPTTTTAVAFAHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRGSTAPPPPPGSGSGDRNEFDGFEDEQFLSMFNDEISAGVAPTVSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNETDEVQSQQQSDTQTQSNSTATAASTERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKTENAAPPVTATTVTDGKLCNVAMASVHFRSHNLFTAIPIGRSAAKNPRIQANIKTQLKSSRTQRIMEGISVSGEVGGAGGAYSYDALKRLDQIWSRICSGQEAPEAAQEVVRRLSGAFSRSDLGEKATDTFDVLVCGGTLGVFIATALSLKGLRVGIVERYVLKGRKQEWNISRKELIELVEVGVLTEDDIEQATAMKFNPNRCAFEGKGEIWVEDILNLGISPEKLIEIVKKRFISLGGVIFEGCNVSSICIYDDMTVMQLSDGNILSSQLTIDAMGNFSPVVKQIRRGRKPDGVCLAVGSCARGFKDNSTSDVIYSSSSLKKVGISEVQLFWEAFPAGSGPVDRTTYMFTYIDPQPGSPKLEDLLEEYWDLMPKYQGVSLDDLKILRIFYGIFPTYRDSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRLSTGIYEAVTGNFLDSDSLSLLNPYMPNLSSSWLFQRAMSAKQRSNISPYFINELLHVNFQSMQRLGDPVLRPFLQDVVQFVPLAQTLGLVMLTKPQLLPLIYKQVGIPVLLDWAGHFGMLGYYTILSTFVDPIIRPFLSSLTPKMNFKWKRQLEAWKYGAGLDYKL | 893 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8200732 | 8208403 | + | CmaCh19G009030.1 | Cma19g00903 | 315591 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00903 | 893 | PANTHER | LYCOPENE BETA/EPSILON CYCLASE PROTEIN | 335 | 892 | - | - | |
Cma19g00903 | 893 | SUPERFAMILY | FAD/NAD(P)-binding domain | 420 | 717 | IPR036188 | - | |
Cma19g00903 | 893 | Gene3D | - | 417 | 782 | IPR036188 | - | |
Cma19g00903 | 893 | MobiDBLite | consensus disorder prediction | 121 | 136 | - | - | |
Cma19g00903 | 893 | CDD | bZIP_plant_RF2 | 190 | 240 | IPR044759 | GO:0003700|GO:0006355 | |
Cma19g00903 | 893 | Coils | Coil | 268 | 288 | - | - | |
Cma19g00903 | 893 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 192 | 207 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00903 | 893 | SMART | brlzneu | 185 | 249 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00903 | 893 | MobiDBLite | consensus disorder prediction | 156 | 183 | - | - | |
Cma19g00903 | 893 | PANTHER | LYCOPENE BETA/EPSILON CYCLASE PROTEIN | 335 | 892 | - | - | |
Cma19g00903 | 893 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 187 | 239 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00903 | 893 | MobiDBLite | consensus disorder prediction | 80 | 102 | - | - | |
Cma19g00903 | 893 | SUPERFAMILY | Leucine zipper domain | 189 | 243 | IPR046347 | GO:0003700|GO:0006355 | |
Cma19g00903 | 893 | Coils | Coil | 140 | 160 | - | - | |
Cma19g00903 | 893 | MobiDBLite | consensus disorder prediction | 137 | 155 | - | - | |
Cma19g00903 | 893 | MobiDBLite | consensus disorder prediction | 121 | 191 | - | - | |
Cma19g00903 | 893 | Pfam | bZIP transcription factor | 189 | 232 | IPR004827 | GO:0003700|GO:0006355 | |
Cma19g00903 | 893 | Gene3D | - | 188 | 259 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g00693 | Cma-Chr1:3617761 | Cma19g00903 | Cma-Chr19:8200732 | 4.42E-21 | dispersed | |
Cma01g01233 | Cma-Chr1:8885230 | Cma19g00903 | Cma-Chr19:8200732 | 4.89E-98 | dispersed | |
Cma04g01854 | Cma-Chr4:9401035 | Cma19g00903 | Cma-Chr19:8200732 | 6.66E-26 | dispersed | |
Cma09g00832 | Cma-Chr9:4091241 | Cma19g00903 | Cma-Chr19:8200732 | 1.63E-107 | dispersed | |
Cma19g00903 | Cma-Chr19:8200732 | Cma16g00389 | Cma-Chr16:1901032 | 9.93E-27 | dispersed | |
Cma11g01804 | Cma-Chr11:12068222 | Cma19g00903 | Cma-Chr19:8200732 | 1.96E-146 | wgd | |
Cma19g00903 | Cma-Chr19:8200732 | Cma20g00588 | Cma-Chr20:2783690 | 5.81E-58 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36924 | PF00170 | bZIP_1 | 1.20E-08 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00903 | - | - | csv:101203820 | 1041.18 |