Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00903 ATGGCACAGCTACCGCCGAAGATCCCAAATATGGCGACCAATTGGCCGGAATTTTCCCGTCAGAAAATCCCTTCAATGGAAACCTTTGCACCGACAACCACAACGGCGGTGGCGTTTGCTCACCAGAACCCTTCTTGGGTCGACGAGTTTCTCGATTTTTCTTCCGCTAGACGTGGGTCTCACCGGCGCTCCGTTAGTGATTCCATCACATTCCTTGAAATGCCAATGCTGGAGGAAGATTGCCGAGGCTCCACTGCGCCGCCACCGCCGCCGGGATCTGGCTCCGGCGACCGGAATGAATTTGATGGATTCGAAGACGAGCAATTCCTATCGATGTTTAACGACGAAATCTCCGCCGGCGTGGCGCCCACAGTGTCGTCGTCGAACCCCTCCACGCCGTCTGATCACAACAGCATTAACGACGAGAAAGATGCCCAAAACGACGGCAAGCAAAATCAGAACAAAAACGAAACCGACGAAGTACAAAGCCAACAGCAATCGGACACTCAAACACAATCCAATTCCACGGCAACGGCGGCTTCCACCGAACGAATAACAGACCCCAAAAGAGTCAAAAGAATTCTGGCAAATCGGCAATCGGCTCAAAGATCACGAGTGAGGAAGCTTCAATACATATCAGAACTCGAACGAAGCGTTACATCGTTACAGGCTGAAGTTTCGGTGCTGTCGCCGCGAGTGGCGTTTTTGGACCACCAGAGATTGCTTCTCAACGTCGACAACAGTGCTCTGAAGCAAAGAATCGCCGCCCTTGCACAGGATAAGATTTTTAAAGATGCTCATCAAGAGGCACTAAAAAGAGAGATAGAGAGACTGAGGCAAGTATATCACCAGCAAAACATCAAGAAGACGGAAAATGCAGCGCCACCCGTCACGGCGACCACCGTGACGGACGGCAAGCTTTGTAATGTAGCCATGGCCTCTGTTCATTTCAGATCCCACAATCTCTTCACTGCCATCCCAATTGGAAGATCGGCAGCTAAGAACCCCAGAATTCAAGCTAATATAAAAACACAGCTCAAGTCTTCTAGAACCCAGAGGATAATGGAGGGCATATCAGTTTCAGGGGAGGTTGGTGGTGCTGGTGGAGCATACTCATACGATGCTTTGAAGAGGTTGGATCAAATTTGGTCCAGAATTTGCTCTGGCCAAGAAGCTCCAGAAGCCGCACAGGAAGTCGTCCGTCGTCTCTCTGGTGCGTTCAGCCGTTCCGATTTGGGAGAGAAAGCCACCGACACATTTGATGTGTTGGTTTGTGGAGGTACTTTGGGAGTGTTCATAGCCACAGCTTTAAGTTTGAAGGGTCTTCGTGTCGGTATAGTGGAAAGATATGTTCTGAAAGGGAGGAAACAAGAATGGAACATTTCAAGGAAAGAGCTGATAGAACTCGTTGAAGTTGGAGTATTAACAGAAGATGACATTGAACAAGCTACTGCTATGAAGTTTAATCCTAACAGATGTGCATTTGAAGGGAAAGGCGAAATCTGGGTTGAAGACATCCTCAATCTTGGTATCTCACCTGAGAAGCTTATAGAGATCGTGAAGAAACGTTTCATTTCTCTAGGTGGAGTCATCTTTGAGGGATGCAACGTTTCAAGCATTTGCATATACGATGATATGACTGTGATGCAACTCTCTGATGGGAACATTTTATCTTCTCAACTCACTATTGATGCAATGGGGAACTTTTCACCTGTGGTGAAACAGATAAGACGTGGGAGGAAGCCTGATGGTGTTTGTCTTGCTGTTGGATCATGTGCTCGTGGATTTAAGGATAACTCAACAAGTGATGTCATTTACAGCAGTTCATCCTTAAAAAAGGTCGGGATCTCAGAAGTTCAACTTTTCTGGGAGGCGTTTCCAGCCGGGTCGGGGCCTGTGGATCGAACTACTTACATGTTTACATATATCGATCCTCAACCAGGGTCACCTAAACTTGAAGACCTTTTAGAAGAATACTGGGATTTGATGCCAAAATATCAGGGAGTCTCTCTTGATGACTTGAAGATATTGAGAATTTTTTATGGCATCTTTCCGACTTATCGTGACAGCCCGCTGCCAGCTGCTTTTGATCGTGTTCTACAGTTTGGAGATGCAAGTGGCATTCAGTCACCCGTTTCATTTGGTGGATTTGGGAGCTTGACTAGGCACCTCGGGAGGTTGTCAACTGGGATATATGAAGCTGTAACAGGCAACTTCCTTGACTCTGATAGCTTATCACTGCTGAATCCTTACATGCCTAATTTAAGTAGTTCATGGTTGTTTCAAAGAGCTATGTCTGCAAAGCAACGATCAAACATTTCTCCATATTTTATCAATGAGCTTCTTCATGTAAACTTTCAGAGTATGCAGAGATTGGGGGATCCAGTGCTGAGGCCTTTCCTTCAGGATGTTGTGCAGTTTGTACCTCTTGCCCAGACCCTAGGTCTAGTTATGTTAACTAAACCTCAACTTCTTCCATTAATATACAAACAGGTAGGCATCCCAGTGTTGCTCGACTGGGCTGGACATTTCGGCATGCTTGGCTACTACACGATTCTCTCGACATTTGTTGATCCGATTATAAGGCCATTCCTAAGTTCACTAACACCAAAGATGAATTTCAAGTGGAAACGACAACTCGAGGCCTGGAAGTATGGAGCTGGTTTAGATTACAAGCTATGA 2682 46.38 MAQLPPKIPNMATNWPEFSRQKIPSMETFAPTTTTAVAFAHQNPSWVDEFLDFSSARRGSHRRSVSDSITFLEMPMLEEDCRGSTAPPPPPGSGSGDRNEFDGFEDEQFLSMFNDEISAGVAPTVSSSNPSTPSDHNSINDEKDAQNDGKQNQNKNETDEVQSQQQSDTQTQSNSTATAASTERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNIKKTENAAPPVTATTVTDGKLCNVAMASVHFRSHNLFTAIPIGRSAAKNPRIQANIKTQLKSSRTQRIMEGISVSGEVGGAGGAYSYDALKRLDQIWSRICSGQEAPEAAQEVVRRLSGAFSRSDLGEKATDTFDVLVCGGTLGVFIATALSLKGLRVGIVERYVLKGRKQEWNISRKELIELVEVGVLTEDDIEQATAMKFNPNRCAFEGKGEIWVEDILNLGISPEKLIEIVKKRFISLGGVIFEGCNVSSICIYDDMTVMQLSDGNILSSQLTIDAMGNFSPVVKQIRRGRKPDGVCLAVGSCARGFKDNSTSDVIYSSSSLKKVGISEVQLFWEAFPAGSGPVDRTTYMFTYIDPQPGSPKLEDLLEEYWDLMPKYQGVSLDDLKILRIFYGIFPTYRDSPLPAAFDRVLQFGDASGIQSPVSFGGFGSLTRHLGRLSTGIYEAVTGNFLDSDSLSLLNPYMPNLSSSWLFQRAMSAKQRSNISPYFINELLHVNFQSMQRLGDPVLRPFLQDVVQFVPLAQTLGLVMLTKPQLLPLIYKQVGIPVLLDWAGHFGMLGYYTILSTFVDPIIRPFLSSLTPKMNFKWKRQLEAWKYGAGLDYKL 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8200732 8208403 + CmaCh19G009030.1 Cma19g00903 315591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00903 893 PANTHER LYCOPENE BETA/EPSILON CYCLASE PROTEIN 335 892 - -
Cma19g00903 893 SUPERFAMILY FAD/NAD(P)-binding domain 420 717 IPR036188 -
Cma19g00903 893 Gene3D - 417 782 IPR036188 -
Cma19g00903 893 MobiDBLite consensus disorder prediction 121 136 - -
Cma19g00903 893 CDD bZIP_plant_RF2 190 240 IPR044759 GO:0003700|GO:0006355
Cma19g00903 893 Coils Coil 268 288 - -
Cma19g00903 893 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 192 207 IPR004827 GO:0003700|GO:0006355
Cma19g00903 893 SMART brlzneu 185 249 IPR004827 GO:0003700|GO:0006355
Cma19g00903 893 MobiDBLite consensus disorder prediction 156 183 - -
Cma19g00903 893 PANTHER LYCOPENE BETA/EPSILON CYCLASE PROTEIN 335 892 - -
Cma19g00903 893 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 187 239 IPR004827 GO:0003700|GO:0006355
Cma19g00903 893 MobiDBLite consensus disorder prediction 80 102 - -
Cma19g00903 893 SUPERFAMILY Leucine zipper domain 189 243 IPR046347 GO:0003700|GO:0006355
Cma19g00903 893 Coils Coil 140 160 - -
Cma19g00903 893 MobiDBLite consensus disorder prediction 137 155 - -
Cma19g00903 893 MobiDBLite consensus disorder prediction 121 191 - -
Cma19g00903 893 Pfam bZIP transcription factor 189 232 IPR004827 GO:0003700|GO:0006355
Cma19g00903 893 Gene3D - 188 259 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00693 Cma-Chr1:3617761 Cma19g00903 Cma-Chr19:8200732 4.42E-21 dispersed
Cma01g01233 Cma-Chr1:8885230 Cma19g00903 Cma-Chr19:8200732 4.89E-98 dispersed
Cma04g01854 Cma-Chr4:9401035 Cma19g00903 Cma-Chr19:8200732 6.66E-26 dispersed
Cma09g00832 Cma-Chr9:4091241 Cma19g00903 Cma-Chr19:8200732 1.63E-107 dispersed
Cma19g00903 Cma-Chr19:8200732 Cma16g00389 Cma-Chr16:1901032 9.93E-27 dispersed
Cma11g01804 Cma-Chr11:12068222 Cma19g00903 Cma-Chr19:8200732 1.96E-146 wgd
Cma19g00903 Cma-Chr19:8200732 Cma20g00588 Cma-Chr20:2783690 5.81E-58 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36924 PF00170 bZIP_1 1.20E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00903 - - csv:101203820 1041.18