Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00912 ATGGACGCCGCCCCTTCCCCTCCTCCTCCTCCTCCACCACCACCCCCTCCTCCTCCTCCGCCCCCTCCTCCTCCTCCTCCTCCGCCCTCCCACCGTCTCCTCCTCGACGAGATGAACTTCTTCCCCGCCGATGACAAATCCCGCGTCCTCCTCGACTCCAAACTCGCTTCACGCAATCGCAGTCCCACCAAACTCGACTTCAACGTTAACACAGGCTTGAATCTTTTGACCACCAATTCCAGTAGCGATCAATCCATGGTCGACGATGGAGCTTCTCCAAACCCAGAAGAAAAAAGAGCCAAAAACGAGCGAGCAGTTCTTCAAGCTGAATTGGAGAGGCTAAAATCAGAGAATCTAAGATTAAAGGACATGTTAAATCAAGTGACGTCCAATTACCAAGCGCTACAGATGCACCTTGCAACCCTAATTCAAAACCAGAAAGCGGCCGACGCTGCCGATCCGATTGAGGAAAAGTCCGCCGCCGCCCAAGAAAAGGTCAGACACGGCAGCGGATGTAATACTAATAAGCTGGTCCCAAGGCAATTTATGGATCTTGGATTGGCCACGAATGCCAACACCGATGATCTGTCAATGTCATCGTCTGACGGAAGGAGTGGAGAGCAGTCACGATCTCCGGTTACAACCGGAGAAGTCGCGTCATCCAAACGACATAGCCCGGACACGAATTGGAGTTCCAATAATAATAATAAGGTGCCCAAATTAGGTTCTTCTTCTTCCTCTTCTTCAGCCAAAGATGCAGATCAAACTGAATCTACTATGAGAAAGGCTCGAGTCTCCGTTCGAGCTAGATCAGAAGCTCCCATGATCACGGACGGATGTCAATGGAGAAAATACGGGCAAAAAATGGCGAAGGGAAACCCTTGTCCACGAGCTTACTACCGGTGCACCATGGCGGCCGGCTGCCCGGTTAGAAAACAAGTTCAAAGATGTGCGGAAGACAAAACAATTTTGATAACAACCTACGAGGGAAACCACAACCATCCATTACCACCGGCGGCCATGGCAATGGCTTCAACAACATCATCGGCGGCTAGGATGCTTCTATCAGGGTCCATGTCAAGTGCGGATGGATTAATGAATCCAAACTTTTTAGCAAGAACCCTATTGCCATGCTCTTCAAGCATGGCTACAATCTCAGCCTCGGCTCCATTTCCCACCGTCACATTGGACCTAACACAAACCCCTAACCCTTTATTCCAACGCCCGGCTGCCGGCCACTTCCCAATTTCGTTTGCGGCCACTCCGCCTCAGAGCTTCCCGCAGATCTTCGGACATGCATTGTACAACCAATCGAAATTCTCCGGCCTCCAAATGTCGAAGGACATGGAAGCGCCGCCTCCACCTCCGGCGTTGCAGAATCCATTGGCCGATACGTTGAGTGCGGCGATTGCCTCCGACCCGAATTTTATTGCAGCGTTGGCGACGGCGATGACGTCGTTGATTGGAGGATCTCATCATCAAAAGGAGAATGGTAATGGGAGTAGCAATGTTGATAACAATACAACTAGCAATTCCCAACAGTAA 1545 50.94 MDAAPSPPPPPPPPPPPPPPPPPPPPPPPSHRLLLDEMNFFPADDKSRVLLDSKLASRNRSPTKLDFNVNTGLNLLTTNSSSDQSMVDDGASPNPEEKRAKNERAVLQAELERLKSENLRLKDMLNQVTSNYQALQMHLATLIQNQKAADAADPIEEKSAAAQEKVRHGSGCNTNKLVPRQFMDLGLATNANTDDLSMSSSDGRSGEQSRSPVTTGEVASSKRHSPDTNWSSNNNNKVPKLGSSSSSSSAKDADQTESTMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSMSSADGLMNPNFLARTLLPCSSSMATISASAPFPTVTLDLTQTPNPLFQRPAAGHFPISFAATPPQSFPQIFGHALYNQSKFSGLQMSKDMEAPPPPPALQNPLADTLSAAIASDPNFIAALATAMTSLIGGSHHQKENGNGSSNVDNNTTSNSQQ 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8235872 8237907 + CmaCh19G009120.1 Cma19g00912 315600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00912 514 Gene3D WRKY domain 261 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g00912 514 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 28 511 IPR044810 GO:0003700
Cma19g00912 514 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g00912 514 Coils Coil 97 131 - -
Cma19g00912 514 MobiDBLite consensus disorder prediction 193 270 - -
Cma19g00912 514 PANTHER OS05G0567200 PROTEIN 28 511 - -
Cma19g00912 514 MobiDBLite consensus disorder prediction 490 514 - -
Cma19g00912 514 MobiDBLite consensus disorder prediction 154 177 - -
Cma19g00912 514 SMART WRKY_cls 276 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g00912 514 SUPERFAMILY WRKY DNA-binding domain 269 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g00912 514 MobiDBLite consensus disorder prediction 1 32 - -
Cma19g00912 514 MobiDBLite consensus disorder prediction 193 254 - -
Cma19g00912 514 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g00912 514 SUPERFAMILY Formin homology 2 domain (FH2 domain) 19 28 - -
Cma19g00912 514 MobiDBLite consensus disorder prediction 76 101 - -
Cma19g00912 514 MobiDBLite consensus disorder prediction 1 34 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01814 Cma19g00912 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00508 Cma-Chr4:2585081 Cma19g00912 Cma-Chr19:8235872 8.68E-59 dispersed
Cma10g00180 Cma-Chr10:826059 Cma19g00912 Cma-Chr19:8235872 2.57E-62 dispersed
Cma11g00161 Cma-Chr11:830454 Cma19g00912 Cma-Chr19:8235872 3.92E-57 dispersed
Cma13g00932 Cma-Chr13:7382978 Cma19g00912 Cma-Chr19:8235872 6.50E-65 dispersed
Cma16g00368 Cma-Chr16:1747075 Cma19g00912 Cma-Chr19:8235872 2.61E-54 dispersed
Cma11g01814 Cma-Chr11:12117559 Cma19g00912 Cma-Chr19:8235872 0 wgd
Cma19g00912 Cma-Chr19:8235872 Cma03g00549 Cma-Chr3:5107884 1.65E-142 wgd
Cma19g00912 Cma-Chr19:8235872 Cma07g00324 Cma-Chr7:1412905 4.32E-136 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36926 PF03106 WRKY 2.30E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00912 - - cpep:111811775 828.935