Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00913 ATGGCCTGGACCCGACTAGCAGCCGTCGGCCACGGCTCCTTCGCCACCGTCTACCTCGCTGCTTCCTCATCTTCCGGCGACCTTTTCGCTGTCAAGTCTGCCGAGCTTCTCAATTCGGACTTTCTTCAAACAGAGCAGAGGATTCTTTCTTCGCTGTCCCACCCTTCAATTGTGGGCTACAAGGGATTCGACGTAACGACAGAAAATGGGAAGCTAATGTATAATCTCTTCATGGAGTACGCCGCTTGTGGCTCTCTCGCCGATGAAATCGTTCGGCGTGGCGGCCGGATTAAGGAGGTGACGGCGGCGTTTTACACGCGTCAAATTGTCAGAGGATTGGAGTACTTGCACAAGCGGGGTTTGGTGCATTGTGATGTCAAAGCTAAGAACATTTTGATCGGTGGAGATGGTTTGAAGATTGCTGATTTCGGATGCTCCAAATGGGTTCTTGAGTCGCCGGCAGCGGTCTGCGGAACGCCGATGTTTATGGCACCAGAGGTGGCGCGTGGGGAAACACAGGGGATTTCCTCTGACATATGGGCACTCGGGTGTACTTTAATCGAAATGGTGTCTGGCGCTCCGCCGTGGCCTACCGCCGGAGACCCAGTTTCGACGCTGTACCGGATCGCATATTCCGGCGACTCACCGGAAATCCCGAGCTTTTTATCGGCGACAGCGAAGGATTTTTTAGGGAAATGCTTGAGAAGAGACCCGGCAGAACGGTGGAGTACGAGTCAACTTCTTAAACATCCATTTTTGGGGGAACTGAGTTTTGGGTTCGAGATTATCAAGGAATTACATTCAGATTTCGAATCTCCGACGAGTATTTTGGATCAAGGCCCTTGGAACTCGTTAGAAGAAGGATCGCAAACTCTGTTGAAAACAGAGACATGGGAGGACGACAGAATCAAACGGCTGTCGGTGTTTTCAGGGGAAATTAAATGGAAAATGAGAGATGATAATTGGATCACAATCAGAAGCTGTGTTAATGATGATAATTGA 1002 50.2 MAWTRLAAVGHGSFATVYLAASSSSGDLFAVKSAELLNSDFLQTEQRILSSLSHPSIVGYKGFDVTTENGKLMYNLFMEYAACGSLADEIVRRGGRIKEVTAAFYTRQIVRGLEYLHKRGLVHCDVKAKNILIGGDGLKIADFGCSKWVLESPAAVCGTPMFMAPEVARGETQGISSDIWALGCTLIEMVSGAPPWPTAGDPVSTLYRIAYSGDSPEIPSFLSATAKDFLGKCLRRDPAERWSTSQLLKHPFLGELSFGFEIIKELHSDFESPTSILDQGPWNSLEEGSQTLLKTETWEDDRIKRLSVFSGEIKWKMRDDNWITIRSCVNDDN 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8240449 8241450 + CmaCh19G009130.1 Cma19g00913 315601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00913 333 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cma19g00913 333 CDD STKc_MAPKKK 3 253 - -
Cma19g00913 333 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00913 333 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 328 - -
Cma19g00913 333 SUPERFAMILY Protein kinase-like (PK-like) 4 280 IPR011009 -
Cma19g00913 333 Pfam Protein kinase domain 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00913 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Cma19g00913 333 Gene3D Transferase(Phosphotransferase) domain 1 2 307 - -
Cma19g00913 333 PANTHER MAP KINASE KINASE KINASE 1 328 - -
Cma19g00913 333 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00175 Cma19g00913 CCT
Cma19g00913 Cma20g00605 CCT
Cma19g00913 Cma20g00605 ECH
Cma02g00175 Cma19g00913 ECH
Cma11g01815 Cma19g00913 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01118 Cma-Chr1:8194586 Cma19g00913 Cma-Chr19:8240449 2.98E-90 wgd
Cma11g01815 Cma-Chr11:12131750 Cma19g00913 Cma-Chr19:8240449 1.19E-178 wgd
Cma19g00913 Cma-Chr19:8240449 Cma02g00175 Cma-Chr2:804772 5.58E-120 wgd
Cma19g00913 Cma-Chr19:8240449 Cma20g00605 Cma-Chr20:2831848 5.61E-126 wgd
Cma19g00913 Cma-Chr19:8240449 Cma03g00547 Cma-Chr3:5098993 1.58E-97 wgd
Cma19g00913 Cma-Chr19:8240449 Cma07g00322 Cma-Chr7:1405439 7.07E-111 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69345 PF00069 Pkinase 7.80E-58 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00913 K20716 - csv:101205351 529.635