Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00929 ATGCCAGCCGGAATGATGATTCCAGCGAGAAACACGGCGCCGATGATCGGAAGGAATGGAAATGTTGGGATTTTTGGGTCTCCGGCGAGTCTTCTTCTTGGTCAGGGGAATATAATGGAGGGAGGAGGGCAGGTAGAGGGAGTGGAATTTTCAGAGAGCGATTTTGGGAGAATGAGAGAAGGAGAGGAGTTTGAGAGTGCAACAAAATCAAGCAGCGAGAACCAGGAGGTGGGTTCTGGTGATGACCTTGACCATCAACGACCCAAAAAGAAGCGTTACCACCGCCATACTCAGAACCAGATTCAACAAATGGAGGCGTTCTTCAAGGAATGTCCTCACCCAGATGATAAGCAAAGGAAGGAGCTGAGTAGGGAGTTGGGTTTGGAGCCATTGCAAGTCAAGTTTTGGTTCCAAAACAAGAGAACCCAGATGAAGACCCATCATGAGCGACATGAGAACACCCAGCTCCGAACAGAAAATGAGAAGCTTCGAGCTGATAATATGAGGTACAGAGAAGCCCTTGGTAATGCTACGTGTCCTAATTGTGGAGGCCCCACCGCCATTGGAGAGATGTCCTTTGACGAACATCATCTCAGGCTTGAAAACGTCCGCTTGAGAGAAGAGATCGATCGCATCTCAGCCATAGCAGCAAAATACGTAGGAAAGCCAGTATCGAGCTACCCGCTTCTTTCCACACCAATGACGTCAAGTCCTCTAGAACTTGGAATTGGAAGCTATGGCGGCCACAATTCAGGCCTCGGAGCTGGTTGTGGGGACATGTATGGGGCGGTGGACCTTTTGAGGACTATAAGCGCGCCATCGGAGGCTGACAAGCCCATAATCATCGAGCTTGCAGTTGCAGCCATGGAGGAGCTGGTTCGAATGGCTCAGATGGGTGAGCCCTTGTGGATGACTGCACTCGATGGCTCCACGGCTGTACTTAATGAAGATGAATACGTTAGAACCTTCCCTAGAGGAATCGGACCTAAGCCCTCTGGGTTTAGCTGTGAAGCTTCTCGTGCCACTGCTGTTGTCATTATGAACCATATTAGCCTGGTTGAGATGCTCATGGATGTGAATCAGTGGTCAACCGTATTCAGTGGGATTGTGTCAAGAGCTATGACATTAGAAGTATTGTCAACCGGCGTTGCCGGAAACTACAACGGAGCATTACAAGTGATGACATCGGAATTGCAAGTGCCTTCGCCACTCGTTCCGACTCGGGAGAGCTATTTCGTTCGGTACTGTAAACAGCACGGCGAGGGAACTTGGGCTGTGGTCGACGTTTCCTTGGACAATTTACGCCCAACTCCGGCGCTTAGATGCAGGAGAAGGCCATCCGGTTGTCTAATCCAAGACATGCCCAATGGCTATTCTAAGGTTACGTGGGTTGAGCATGTTGAGGTGGATGATCGTGGGGTGCACAGCTTGTACAACCAGCTGGTTAGGTCCGGCCACGCGTTCGGTGCTAAGCGTTGGATTGCGACGTTGGATCGTCAGTGTGAAAGGCTGGCCAGTGCTATGGCTACAAGTATTCCTACTGGTGATGCTGGTGTGATAACCAATCAAGAAGGAAGAAAGAGCATGTTGAAGCTAGCTGAGAGAATGGTGATGAGCTTTTGCGGCGGAGTGAGCGCGTCCACCACACACACATGGACAACTCTGTCGGGAACTGGGGCGGATGATGTTAGAGTTATGACTAGAAAGAGTGTTGACGATCCCGGCAGACCACCCGGCATTGTCCTCAGCGCCGCCACTTCATTTTGGCTTCCTGTTCCTCCCAAAAGAGTGTTTGATTTTCTCAGAGATGAAAATTCTCGAAATGAGTGGGATATTCTTTCGAACGGTGGAATTGTGCAAGAAATGGCTCACATTGCCAATGGTCGCGACACTGGAAACTGTGTTTCATTGCTACGAGTAAACAGTGCAAATTCAAGCCAAAGCAACATGTTGATATTACAAGAGAGCAGCACAGATCAAACAGCCTCGTTTGTGGTGTATGCGCCGGTGGACATTGTGGCCATCAACGTGGTGCTAAACGGTGGAGATCCCGATTATGTCGCCCTTCTCCCGTCTGGATTTGCCATTCTTCCCGACGGAAGCACCACGTCCGACGGCGGCGCTAATGGCGTGGCGGAACATGGGTCCGGCGGGTCGCTTTTAACAGTTGCATTTCAGATTTTGGTGGACTCGGTTCCGACAGCTAAGCTTTCTCTTGGGTCAGTTGCAACAGTCAACAATCTGATTGCCTGTACCGTTGAGAGGATCAAAGCCTCTTTGTCATGCGAGAATCAAGAGGGAAGAAGTCAAGAACGCACCTCGAAGAAGAAGAAAAAGAAGCATAGTTTTAATGGTGGGGGTTCGGGTATTGACTTTGTCCATTATCATTATTGTTTGTGTAGCTAA 2406 49.79 MPAGMMIPARNTAPMIGRNGNVGIFGSPASLLLGQGNIMEGGGQVEGVEFSESDFGRMREGEEFESATKSSSENQEVGSGDDLDHQRPKKKRYHRHTQNQIQQMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTHHERHENTQLRTENEKLRADNMRYREALGNATCPNCGGPTAIGEMSFDEHHLRLENVRLREEIDRISAIAAKYVGKPVSSYPLLSTPMTSSPLELGIGSYGGHNSGLGAGCGDMYGAVDLLRTISAPSEADKPIIIELAVAAMEELVRMAQMGEPLWMTALDGSTAVLNEDEYVRTFPRGIGPKPSGFSCEASRATAVVIMNHISLVEMLMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTSELQVPSPLVPTRESYFVRYCKQHGEGTWAVVDVSLDNLRPTPALRCRRRPSGCLIQDMPNGYSKVTWVEHVEVDDRGVHSLYNQLVRSGHAFGAKRWIATLDRQCERLASAMATSIPTGDAGVITNQEGRKSMLKLAERMVMSFCGGVSASTTHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGIVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESSTDQTASFVVYAPVDIVAINVVLNGGDPDYVALLPSGFAILPDGSTTSDGGANGVAEHGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSCENQEGRSQERTSKKKKKKHSFNGGGSGIDFVHYHYCLCS 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8312158 8316576 + CmaCh19G009290.1 Cma19g00929 315617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00929 801 SMART HOX_1 88 151 IPR001356 GO:0003677
Cma19g00929 801 ProSiteProfiles 'Homeobox' domain profile. 87 147 IPR001356 GO:0003677
Cma19g00929 801 SUPERFAMILY Bet v1-like 522 757 - -
Cma19g00929 801 Pfam Homeodomain 90 145 IPR001356 GO:0003677
Cma19g00929 801 SMART START_1 283 503 IPR002913 GO:0008289
Cma19g00929 801 CDD homeodomain 90 148 IPR001356 GO:0003677
Cma19g00929 801 ProSiteProfiles START domain profile. 274 506 IPR002913 GO:0008289
Cma19g00929 801 SUPERFAMILY Homeodomain-like 77 146 IPR009057 -
Cma19g00929 801 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 54 762 - -
Cma19g00929 801 MobiDBLite consensus disorder prediction 59 98 - -
Cma19g00929 801 Pfam START domain 284 503 IPR002913 GO:0008289
Cma19g00929 801 MobiDBLite consensus disorder prediction 762 783 - -
Cma19g00929 801 Gene3D - 314 500 IPR023393 -
Cma19g00929 801 CDD START_ArGLABRA2_like 278 502 - -
Cma19g00929 801 Coils Coil 153 173 - -
Cma19g00929 801 SUPERFAMILY Bet v1-like 276 505 - -
Cma19g00929 801 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 54 762 IPR042160 -
Cma19g00929 801 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Cma19g00929 801 Gene3D - 76 164 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00163 Cma19g00929 CCT
Cma19g00929 Cma20g00628 CCT
Cma19g00929 Cma20g00628 ECH
Cma02g00163 Cma19g00929 ECH
Cma11g01832 Cma19g00929 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00920 Cma-Chr8:5742070 Cma19g00929 Cma-Chr19:8312158 0 dispersed
Cma01g01144 Cma-Chr1:8366072 Cma19g00929 Cma-Chr19:8312158 6.97E-119 wgd
Cma11g01832 Cma-Chr11:12238851 Cma19g00929 Cma-Chr19:8312158 0 wgd
Cma13g00725 Cma-Chr13:6447191 Cma19g00929 Cma-Chr19:8312158 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma02g00163 Cma-Chr2:753284 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma20g00628 Cma-Chr20:2926078 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma03g00527 Cma-Chr3:5028468 0 wgd
Cma19g00929 Cma-Chr19:8312158 Cma07g00302 Cma-Chr7:1335086 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36928 PF01852 START 8.60E-59 CL0209 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00929 K09338 - csv:101219415 1384.01