Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00930 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCGGGAGCCGGGGGAAAAGAGTATGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGTCTGACTACTGTCCAAGGATTGAAGAAGGAATTTAGTTATAACAAGATTCTTAAGGACCTGAAGAAGGAATTTTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGCCAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCTACCTTCCTTGTACAGGCTGGCATTGTGAAGAAGGAAAATATCAAGATTCACGGTTTTTAA 342 42.69 MSEFNVQIPSAFDPFADANAEDSGAGGKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8319318 8320755 - CmaCh19G009300.1 Cma19g00930 315618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00930 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Cma19g00930 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Cma19g00930 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Cma19g00930 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Cma19g00930 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Cma19g00930 113 Gene3D - 1 113 - -
Cma19g00930 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Cma19g00930 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
Cma19g00930 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01835 Cma19g00930 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01129 Cma-Chr1:8277250 Cma19g00930 Cma-Chr19:8319318 7.61E-60 dispersed
Cma09g00955 Cma-Chr9:4806670 Cma19g00930 Cma-Chr19:8319318 2.20E-59 dispersed
Cma19g00930 Cma-Chr19:8319318 Cma19g00931 Cma-Chr19:8323374 1.56E-80 tandem
Cma11g01834 Cma-Chr11:12249549 Cma19g00930 Cma-Chr19:8319318 6.47E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00930 K03113 - csv:101219651 226.868