Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00931 ATGTCTGAATTCAACGTGCAGATTCCATCTGCTTTTGACCCATTTGCTGATGCAAATGCTGAGGACTCAGGAGCTGGGGCTAAAGAGTACGTTCATGTGCGCATACAGCAACGTAACGGGAGAAAAAGCCTGACAACTGTCCAAGGATTGAAGAAGGAGTTTAGTTATAACAAGATACTCAAGGATCTGAAGAAGGAATTCTGCTGTAATGGCACAGTTGTGCAAGATCCTGAGCTAGGACAGGTTATACAACTTCAGGGAGACCAAAGAAAGAATGTGTCCACCTTCCTTGTGCAGGCTGGCATTGTGAAGAAGGAGAACATCAAGATTCACGGTTTCTGA 342 44.74 MSEFNVQIPSAFDPFADANAEDSGAGAKEYVHVRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKENIKIHGF 113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8323374 8325341 - CmaCh19G009310.1 Cma19g00931 315619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00931 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Cma19g00931 113 PIRSF Transl_init_SUI1_Euk 1 113 IPR005874 GO:0003743
Cma19g00931 113 ProSiteProfiles Translation initiation factor SUI1 family profile. 31 101 IPR001950 GO:0003743|GO:0006413
Cma19g00931 113 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 6 113 IPR005874 GO:0003743
Cma19g00931 113 Pfam Translation initiation factor SUI1 28 102 IPR001950 GO:0003743|GO:0006413
Cma19g00931 113 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 1 113 - -
Cma19g00931 113 CDD eIF1_SUI1 29 112 IPR005874 GO:0003743
Cma19g00931 113 Gene3D - 1 113 - -
Cma19g00931 113 SUPERFAMILY eIF1-like 4 113 IPR036877 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01834 Cma-Chr11:12249549 Cma19g00931 Cma-Chr19:8323374 1.34E-56 dispersed
Cma11g01835 Cma-Chr11:12252767 Cma19g00931 Cma-Chr19:8323374 1.31E-55 dispersed
Cma19g00930 Cma-Chr19:8319318 Cma19g00931 Cma-Chr19:8323374 1.56E-80 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00931 K03113 - csv:101219651 228.409