Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00948 ATGGATGAAGGAAATAGAGGAGAGGGAACATGTTTATTGCATAGCAGAAGTAGTGAATTGGTGGCCAAAAGAAGAAGTGTCAAGAACTTGGTCATCAGCAGCTGGTTTGCAGAGGAGTTGATGTCTTATTTTCTTTTGTACTCATTTGTGTTCTTAATTTCTGTCGTTAATTGTTTTGCTAAAGATATCTTAGAGTTTAAGAGTTGCATAACTGATGAGCGAGGGGATACTCTTGTATCCGCAGGATCCAGATTCGAACTTGGTTTTTTTACGCCGTATGGCAGCTCTGATGGCAGAAGATACTTGGGAATATGGTATTACAAATCAAATCCAAGTACGGTTGTTTGGGTTGCCAATCGAGACAGGCCACTTGCTGGTTCAGATGGTGTCTTGAAGATTGAGGATGATGGCAACCTCAAAGTATATAATGGAAATCAGAATCTTTATTGGTCAACAAACATTGGAAGTTCTGTACTCGATCAGAGGACCCTGAAGCTAATGGATAATGGAAATCTGGTTTTGAGCTATGTAGATCAGGAAGACTTGTCTGAGCACATCCTTTGGCAGAGTTTTGATTACCCAACTGATACATTTCTTCCTGGCATGGTAATGGATGACAACTTAGTGCTGACTTCATGGAAGAACTATGATGATCCGGCTCAAGGGAACTTCACTTTTCAGCTAGATCAAGATGGAAGTCAATATGTCATTTGGAAGAGATCAGTTAAATACTGGAAAAGTGGAGTTTCAGGTAAGTTTATTACCACTGATAAGATGCCTGCTGCATTGTTATACCTTTTGTCAAATTTCTCATCGAAAACTGTCCCAAACTTCTCCGTGCCACATCTCACATCATCATTGTATAGTGATACAAGGTTAGTATTGAACAGCTCAGGTCAGCTTCTATATCTAAACTGGGATGATCACAAAGTCTGGTCTCAGATTTGGGCAGAGCCGAGAGATAGATGCAGTGTGTATAATGCGTGTGGCGATTTTGCTAGCTGTAATAGCGAGGGTGGTATGGCTTGCAAATGCCTGCCTGGTTTTGAGCCCACCTCTCTAGAGAGTTGGAATATTGGAGATTATTCTGGTGGATGCATCAGGAAATCACCAATATGCAGTGTCGACAATGAAAGTGACACTTTTTTGAGTCTAAAGATGATGAAAGCTGGAAACCCTGACTTCCAGTTTAATGCAAAGGATGTCTTTGATTGCAAATTGGAGTGCCTTAACAACTGCCGGTGTCAGGCTTACTCATATTTTGAAGCTAATATCACTAGGCAGGGTGGGATTGATAATTCTGCTTGTTGGATTTGGTCTGGAGATCTCAACAATCTTCAGGATGAATTTGATAATGGCCGTGACCTCAACGTTCGAGTAGCAGTTCGAGATCTAGAGTTGACTGTCAGAAATTGTGGAACATGTGGTACAAACCTCATTCCTTATCCGCTTAGCACAGGACCTGAATGTGGTGACCCAATGTACTTCAATTTTAACTGCAATGTGGCTACTGGCCAGGTTAACTTTGAAGCAGCAGGTGGAACGTACAAGGTTAAATTCATTGATTCAGAAGCGCGGAAATTTATCATTCAAACCAAGGAAGCTGGTGATTGTGGTGATAAAAATTGGATAAACAAAGCCCTTCAGCTGAACCAGTCGTCTCCTTTCCATGTAACCAGCTGGTGCAACTTTAAGGAGACCAATCCAGAGATTTTTTCTCTGAAAACCAGCAATGAAGTTGAAATCAGTTGGGAGCCTCCATTAGAGCCAACTTGTTCTTCAACTACAGACTGCAAAGACTGGCCTTACTCAACTTGCAACATGAGTAAAGATGGAAAGAAAAGATGCCTTTGCATTACAAACTTCCATTGGAATGGCTGGAGCTTGAATTGCACCACAGATCACAACAAAGGAAAGGATGGAAGAGGCAAAACGAGCTTCTCTGTGATTATTGTTGCAACAACCATATGTATAGTCCTTCTGATTATTCTCTCATGTACTGGGTTTTATATTTACTTCTCCAAAACTGGGCTCATTGAAAGACAAGAAAGCAGGGGAAACAGCCAAAAAGATCTAATACTTCACTTGTATGACAACGAGAGACGTGTGAAAGACATGATTGAATCGGGTCGGTTCAAGGAAGATGATACAAATGGAATAGACATTCCATTTTTTGATTTGGAAACAATTCTAATTGCGACAGGGAATTTCTCAAATGCAAATAAGCTTGGACAGGGAGGTTTTGGGCCAGTTTACAAGGGCAAGTTTCCTAGTGGGCAGGAGATTGCTGTAAAGAGGCTCTCGAGAGGTTCAGGACAAGGCTTTGAGGAGTTTAAGAACGAGGTTTTGTTAATTGCGAAACTTCAGCATCGAAATCTCGTTAGACTTTTGGGCTACTGTGTTGAAGGAGATGAAAAGATGTTGCTTTATGAATACATGCCAAACAAAAGCTTAGACGCCTTTATATTCGATCAAAAGCTGAGTGTGGCATTGGATTGGGACGTGCGCTTCAATGTCATTTTGGGAATCGCTCGTGGCCTTCTTTATCTACATCAAGATTCGAGGTTGAGGATTATTCATAGGGATTTGAAGACGAGCAACATTCTTCTAGATGAGGAGATGAATCCCAAAATATCTGACTTTGGCTTGGCGAGGATATTTGGAGGGAAAGAAACTGCGACGAATACCAGAAGGGTGGTAGGGACTTATGGTTATATGTCACCGGAATACGCATTGGATGGCATATTTTCTGTAAAATCTGATGTCTTTAGCTTCGGTGTAGTCGTAGTCGAGATCATTAGTGGAAAAAGGAACACAGGATTCTATCACTCAGAGAAAGCTTTGAGTCTTCTAGGCTATGCTTGGGATTTATGGATGAAAGACGAAGGCTTGGAATTAATGGAGCCAACGCTGAGTGAGAATTGCAAAAGAGAAGAATATTTGAAATGTTTAAACGTGGGGCTGTTGTGCGTGCAGGAAGATCCATGGGATCGACCCACCATGTCAAATGTGGTCTTCATGCTCGGCAGCGAAACTGCAACTCTTCCATCTCCGAAACCACCGGCATTCGTCGTGCGACGATGCCCCTCAAGCAGAGCTTCTTCCTCCACCAAACCAGAAACTTTCTCCCATAATGAGTTGACAGTCACCTTACAAGAAGACAAAGAGACCTTTGAATCTTGTTTGAGAGATTCAAATCTATGCATGGCTATACGTGAGCTTTATTGGACAAGGTTCGGTCTATACATGAGTTTTGTTGATCAGGGTTCGGTCTATATACGAGGCTTATTGAATAAGGACAAAAACACGAAGAGGAAGACAATCTTCGATCGGAAATCAACAATGGAACGGCACGTACGCCTTTTTCTCAACAGGCTCTCACTTGCTTTCGTTGCCATAGCCACATTCATCCTCCTCTTGCTCTTCCTCCAAACCCCGGAAACCTGCGTTCCCCCAAATTCCCCTTCAAAACCCCATCTCAGATTCCCCAAATCCTCCTGCGATTCCACTCCTCGCGAGCTCGTTTCCGTCGACAAGAAGAACAAGCGCCTCTGGTCCACCAAAGATTGGCAGAAAAAGGTCTCCTCATTCGTCCAATTCTTCCACACCATTCGCGATCTAGGGCTTCTCCATAACCACACCAAAGTCGTCTGTATTTCTGCCGGAGCAGGCCACGAGGTCATGGCGCTCTCTCAGATAGGAGTCCTCGATGTCACCGGCATCGAATTGGTCGATTCACCGCCCTTGGTCAGTCGTGCTGATCCACATAATTTGCCCTTTTTTGATCATGTTTTTGATTTAGCGTTTACTCCTCATTTGTCTGAGGCCTTGTTTCCGTCTCAATTTGTCTCGGAAATGGAGAGAGCTGTTCGTCCGAATGGCGCCTGTGTGATCGTCGTGGAGGAATGTGGAGATGCTGAAGTTAGGGAGATTGTAGGTTTGTTTACTAAATCGCGATTTGTAAATTCGATCAATGTGACGCTAACAGGGTTGAAAATGACTCGCATTCTAATGAAAAGAATTTCTCCATAG 4032 42.88 MDEGNRGEGTCLLHSRSSELVAKRRSVKNLVISSWFAEELMSYFLLYSFVFLISVVNCFAKDILEFKSCITDERGDTLVSAGSRFELGFFTPYGSSDGRRYLGIWYYKSNPSTVVWVANRDRPLAGSDGVLKIEDDGNLKVYNGNQNLYWSTNIGSSVLDQRTLKLMDNGNLVLSYVDQEDLSEHILWQSFDYPTDTFLPGMVMDDNLVLTSWKNYDDPAQGNFTFQLDQDGSQYVIWKRSVKYWKSGVSGKFITTDKMPAALLYLLSNFSSKTVPNFSVPHLTSSLYSDTRLVLNSSGQLLYLNWDDHKVWSQIWAEPRDRCSVYNACGDFASCNSEGGMACKCLPGFEPTSLESWNIGDYSGGCIRKSPICSVDNESDTFLSLKMMKAGNPDFQFNAKDVFDCKLECLNNCRCQAYSYFEANITRQGGIDNSACWIWSGDLNNLQDEFDNGRDLNVRVAVRDLELTVRNCGTCGTNLIPYPLSTGPECGDPMYFNFNCNVATGQVNFEAAGGTYKVKFIDSEARKFIIQTKEAGDCGDKNWINKALQLNQSSPFHVTSWCNFKETNPEIFSLKTSNEVEISWEPPLEPTCSSTTDCKDWPYSTCNMSKDGKKRCLCITNFHWNGWSLNCTTDHNKGKDGRGKTSFSVIIVATTICIVLLIILSCTGFYIYFSKTGLIERQESRGNSQKDLILHLYDNERRVKDMIESGRFKEDDTNGIDIPFFDLETILIATGNFSNANKLGQGGFGPVYKGKFPSGQEIAVKRLSRGSGQGFEEFKNEVLLIAKLQHRNLVRLLGYCVEGDEKMLLYEYMPNKSLDAFIFDQKLSVALDWDVRFNVILGIARGLLYLHQDSRLRIIHRDLKTSNILLDEEMNPKISDFGLARIFGGKETATNTRRVVGTYGYMSPEYALDGIFSVKSDVFSFGVVVVEIISGKRNTGFYHSEKALSLLGYAWDLWMKDEGLELMEPTLSENCKREEYLKCLNVGLLCVQEDPWDRPTMSNVVFMLGSETATLPSPKPPAFVVRRCPSSRASSSTKPETFSHNELTVTLQEDKETFESCLRDSNLCMAIRELYWTRFGLYMSFVDQGSVYIRGLLNKDKNTKRKTIFDRKSTMERHVRLFLNRLSLAFVAIATFILLLLFLQTPETCVPPNSPSKPHLRFPKSSCDSTPRELVSVDKKNKRLWSTKDWQKKVSSFVQFFHTIRDLGLLHNHTKVVCISAGAGHEVMALSQIGVLDVTGIELVDSPPLVSRADPHNLPFFDHVFDLAFTPHLSEALFPSQFVSEMERAVRPNGACVIVVEECGDAEVREIVGLFTKSRFVNSINVTLTGLKMTRILMKRISP 1343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8421147 8426244 - CmaCh19G009480.1 Cma19g00948 315636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00948 1343 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 59 1052 - -
Cma19g00948 1343 ProSiteProfiles PAN/Apple domain profile. 373 461 IPR003609 -
Cma19g00948 1343 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 59 1052 - -
Cma19g00948 1343 Pfam S-locus glycoprotein domain 245 352 IPR000858 GO:0048544
Cma19g00948 1343 Pfam PAN-like domain 373 445 IPR003609 -
Cma19g00948 1343 CDD PAN_AP_plant 373 461 - -
Cma19g00948 1343 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1204 1305 IPR029063 -
Cma19g00948 1343 Gene3D Vaccinia Virus protein VP39 1201 1335 IPR029063 -
Cma19g00948 1343 Pfam D-mannose binding lectin 113 208 IPR001480 -
Cma19g00948 1343 SMART blect_4 71 194 IPR001480 -
Cma19g00948 1343 Gene3D - 62 191 IPR036426 -
Cma19g00948 1343 ProSiteProfiles Bulb-type lectin domain profile. 63 187 IPR001480 -
Cma19g00948 1343 SUPERFAMILY Protein kinase-like (PK-like) 721 1038 IPR011009 -
Cma19g00948 1343 ProSitePatterns Serine/Threonine protein kinases active-site signature. 858 870 IPR008271 GO:0004672|GO:0006468
Cma19g00948 1343 SMART serkin_6 737 1007 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00948 1343 Gene3D Phosphorylase Kinase; domain 1 700 812 - -
Cma19g00948 1343 CDD STKc_IRAK 743 1008 - -
Cma19g00948 1343 ProSiteProfiles Protein kinase domain profile. 737 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00948 1343 SUPERFAMILY alpha-D-mannose-specific plant lectins 114 219 IPR036426 -
Cma19g00948 1343 Gene3D Transferase(Phosphotransferase) domain 1 813 1015 - -
Cma19g00948 1343 SMART ntp_6 377 460 IPR003609 -
Cma19g00948 1343 CDD B_lectin 75 194 IPR001480 -
Cma19g00948 1343 Pfam Domain of unknown function (DUF3403) 1010 1051 IPR021820 GO:0004674
Cma19g00948 1343 Pfam Protein tyrosine and serine/threonine kinase 740 1006 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00689 Cma-Chr13:6299756 Cma19g00948 Cma-Chr19:8421147 2.20E-144 dispersed
Cma17g00805 Cma-Chr17:6344767 Cma19g00948 Cma-Chr19:8421147 9.29E-09 dispersed
Cma19g00948 Cma-Chr19:8421147 Cma09g00906 Cma-Chr9:4507821 4.67E-58 dispersed
Cma20g00650 Cma-Chr20:3005517 Cma19g00948 Cma-Chr19:8421147 1.16E-12 dispersed
Cma20g00651 Cma-Chr20:3006761 Cma19g00948 Cma-Chr19:8421147 3.82E-30 dispersed
Cma04g01798 Cma-Chr4:9074079 Cma19g00948 Cma-Chr19:8421147 1.04E-34 transposed
Cma13g01021 Cma-Chr13:7828480 Cma19g00948 Cma-Chr19:8421147 2.37E-114 transposed
Cma01g01169 Cma-Chr1:8503318 Cma19g00948 Cma-Chr19:8421147 2.82E-131 wgd
Cma11g01848 Cma-Chr11:12318789 Cma19g00948 Cma-Chr19:8421147 2.13E-133 wgd
Cma13g00695 Cma-Chr13:6328597 Cma19g00948 Cma-Chr19:8421147 1.01E-62 wgd
Cma19g00948 Cma-Chr19:8421147 Cma20g00649 Cma-Chr20:3000088 0 wgd
Cma19g00948 Cma-Chr19:8421147 Cma03g00504 Cma-Chr3:4936160 8.63E-58 wgd
Cma19g00948 Cma-Chr19:8421147 Cma07g00288 Cma-Chr7:1281330 1.84E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69346 PF07714 PK_Tyr_Ser-Thr 4.10E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00948 - - csv:101217751 2005.33