Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00965 ATGAGATTTTTCTCCTTCTTCACTAGAGCTTCGAGAGCTTTTCATGGCTCCCCTACATACTCAAAGCTTCTGGTCATCAGCACGCTCAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAATCAGACGCTAGCTGTCCTATTGAGGAGTGCCCAAAAAAGAGAGTTCTGGTGCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGGATCTGGATGCATCGAAATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTATTGCCTAGCGTTACATGTGGATCAGTTGAAGCACGGAGCATTGTCGAACCTGTTCGAAACATCGTGAAGAAGAGAAAAGGTGAAGTTAAATTCTGGGAAGCTGAATGCACTAAGATTGATGCTGCAAACAAAAAGGTTTTCTGCCGGTCATTAGTTGACAATAACTTGGTTGGAAATAGGGAGTTTGCTTTAGAATATGACTATTTGGTAATAGCAATGGGAGCGCAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGCCATTTTCTCAAGGAAGTGCAAGATGCTCAGAAGATCCGCAAAAGTGTGATAGATTGCTTTGAAATGGCTGTGATTCCTAGTCTAAGTGACGAAGAGCGAAGGAGAAATCTTCATTTCATTATTGTTGGAGGGGGTCCCACCGGGGTTGAATTTGCTGCCGAGCTTCACGACTTCTTTAAAGAAGATTTGGTTAATTTATATCCTACGGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTGAATGCGTTTGATGAAAGAATTAGTTCATTTGCCGAACAAAAATTCCAAAGAGATGGTATTGATGTGCACACAGGATGTCGAGTTGTCAGTGTATCTGATAAGGAAATTAAGATGAAGGTGAAATCATCTGGAGAAGTCTGTTCAATACCGCATGGATTAATTGTGTGGTCTACAGGCATCATGACTCGTCCTGTTGTGAAGGATTTCATGGAGCAAATTGGCCAGGGTAGTAGACGCATTCTAACCACTGATGAATGGCTTCGAGTGAAGGGCACTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGAAAGATATTGCCGCCATATTTGAAGCTGCAGACAAAGATAACTCTGGAACCCTGACAGTTACAGAATTTCAAGATGTTATAGGTGATATCCTCATTAGATATCCTCAAGTAGAAATATATTTGAGGAGCAAACATCTACGTGATGTAAAAGATCTATTGAAAGATTCTCAGGGACATGAGAACGAAGTAGATATTGAAGGATTTAAGTCGGCTCTTTCTCATGCTGACACGCAGATGAAAAATCTACCAGCTACTGCACAGGTTGCTGCCCAACAAGGTGCGTATCTTAGCAGGTGCTTCAACCGTAGGGAGCAGTGTACTGAGAACCCTGAAGGCCCTCGACGTTTTAAGAGTTCTGGACGTTATCAGTTTCTACCCTTTCGGTACAAGCACTTGGGACAGTTCGCTCCTTTAGGGGGAGAACAAGCCGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCGCAGCACTCAGTGGCTCTGGTATTCTGTATATGCAAGCAAGCAGGTCAGCTGGCGCACGAGGTATTTAGTGGTATCAGACTGGACAAGGAAGTTTGTATTTGGAAGAGACTCGAGCGGCATCTGA 1725 43.13 MRFFSFFTRASRAFHGSPTYSKLLVISTLSSGGLLAYADSQSDASCPIEECPKKRVLVLGTGWAGTSFLKDLDASKYDVQVVSPQNYFSFTPLLPSVTCGSVEARSIVEPVRNIVKKRKGEVKFWEAECTKIDAANKKVFCRSLVDNNLVGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVQDAQKIRKSVIDCFEMAVIPSLSDEERRRNLHFIIVGGGPTGVEFAAELHDFFKEDLVNLYPTVKDLVKISVIQSGDHILNAFDERISSFAEQKFQRDGIDVHTGCRVVSVSDKEIKMKVKSSGEVCSIPHGLIVWSTGIMTRPVVKDFMEQIGQGSRRILTTDEWLRVKGTQNVYAIGDCATIDQRKIMKDIAAIFEAADKDNSGTLTVTEFQDVIGDILIRYPQVEIYLRSKHLRDVKDLLKDSQGHENEVDIEGFKSALSHADTQMKNLPATAQVAAQQGAYLSRCFNRREQCTENPEGPRRFKSSGRYQFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGRSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFVFGRDSSGI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8488705 8493444 - CmaCh19G009650.1 Cma19g00965 315653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00965 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Cma19g00965 574 SUPERFAMILY EF-hand 329 457 IPR011992 -
Cma19g00965 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Cma19g00965 574 PANTHER NADH DEHYDROGENASE 6 574 IPR045024 GO:0003954|GO:0006116
Cma19g00965 574 Gene3D - 47 395 - -
Cma19g00965 574 Gene3D - 423 573 - -
Cma19g00965 574 PANTHER EXTERNAL ALTERNATIVE NAD(P)H-UBIQUINONE OXIDOREDUCTASE B2, MITOCHONDRIAL-RELATED 6 574 - -
Cma19g00965 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
Cma19g00965 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 54 384 IPR023753 GO:0016491
Cma19g00965 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Cma19g00965 574 SMART efh_1 380 408 IPR002048 GO:0005509
Cma19g00965 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Cma19g00965 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Cma19g00965 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00130 Cma19g00965 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00130 Cma-Chr2:624970 Cma19g00965 Cma-Chr19:8488705 5.84E-93 dispersed
Cma19g00965 Cma-Chr19:8488705 Cma20g00341 Cma-Chr20:1677752 1.23E-13 dispersed
Cma13g00678 Cma-Chr13:6257337 Cma19g00965 Cma-Chr19:8488705 0 wgd
Cma19g00965 Cma-Chr19:8488705 Cma02g00129 Cma-Chr2:623564 2.33E-156 wgd
Cma19g00965 Cma-Chr19:8488705 Cma03g00483 Cma-Chr3:4824553 4.01E-12 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00965 K03885 - csv:101203130 1067.37