Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00972 ATGGGTTGGAAGAGATCCTCGAGGAATGGCAATTTGAGGATCTGCGTGCAAGTTTTAGTCGGATTCGTTATCTGTTCAGCTCATGTTCTTGTCGGAATTACGAATCCTGGGGATGTTGCTGCTATTAGTAGCTTACATACTGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCATTGGGCAAGATCCTTGCGGTGACGCATGGCAAGGTGTTGTATGTAATGATTCAAGCATCATTAAAATAATTGTTAATGCTGCTAATTTGGGAGGTGAACTGGGTGACGACTTGGGATTGTTTGCTTCGATCCAAATAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAGTTTACCCATTACCATGCAGAACTTTTTTCTTTCAGCGAACGCGTTCACTGGAAATATTCCGAGTTCATTATCGTCTTTGATTCATCTGACAGCAATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTCAAGCCATTTCTCAATTGGTGAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCTAGCAATTTATTGGCACTGACCACCCTGAATTTGCAGAACAATCAGCTGTCGGGAAACCTCGATGTTCTGCGAGACCTTCCACTAAAAAACTTAAAGGATGGAAATCCATTTAATTCTTCTGTTACTCCGGCGCCTACTCCTTCTGTATCTCCCCCATTAAAGCCAGCACCAGCACCACGAGTTTCAGGAGCACCGCCCGTTTCAGGTGCACCACCAGTTTCTGGAGCTCCACCGTCCTCTAAACGAAACCCAAAGAAACAGGCTGATGGACCATCAGCACCAGAGGAATCCAGTTCTGGAAGAAACAAGAAAAACACTAAAAGGGTTGTTTTGATAACAATTGCAGTAATTTTGTCATTCATAATTTTGGTTTTGGCATGTGTGCTGTTTATGCCGAGGTGCAGAAGGAGAAGAGTTGATAGTAGTTCCAAGCAACATCAGATAGGTGCTTCTAGGGGCGAGAGAGAGAACGCTGGAAATCAGGGATCCATGCACCATACAATTGATCAGATACCAAATGTTCCAAAAGCAGCAGTTGTGAGGCCAAAGCAGGAACCTCAACCAGTGGCTCAGAAGGTTCCAAAAGCTCATGAAGAAAGACAGAAAGATATGCCAAGAATCAGCGCTGTTCCAAAGAAGGATCATCATGAAGTAGATATGAACACACTCGATGTCTATCTAAGGCCTCCCCCTCCCCCACCACCACCACCACCTCCTGTTGAAGTGGTCTCTGCCGTGCCCATTGTTCCAGCTGAAGTTCCTCCCTTGAAGCCTCCCACTAAACATAAAGTTACCTCAACTTTTGCAAAATCTTTTACCATTGCATCCCTTCAGCAATATACAAACAGCTTTTCGCAAGAGAATCTTCTGGGAGAAGGAATGCTTGGGAGTGTATATAGAGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGACGATGAATTTCTGGAGTTAGTGAATAATATCGATAGAATTCGGCACGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTTCGAGTATTGCAGCGGTGGAACATTGCAGGATGCCCTGCACTTAGATGAAGAGTTCAGAAAGAAACTTTCATGGAATGCTCGCATTAGAATTGCTCTTGGAGCTGCAAGAGCCTTGGAGTATCTACACGAGGTCTGTCAGCCGCCTGTAGTTCATAGGAATTTCAAGTCTGCAAATGTCCTGCTTGATGATGATCTTTCCGTGCGCGTTTCAGATTGTGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTAACGAAATATGGTTACGGAGCACCAGAATTTGAATCAGGAGTTTATACACTTGAGAGCGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGTCGGATGTCTTATGACAGAACGAGGACCCGAGGTGAGCAGTTTCTAGTCAGATGGGCGATTCCTCAGCTTCACGACATAGAGGCATTGACAAGCATGGTCGATCCTTCACTCAACGGTCGATACCCTGCCAAGTCGTTATCATACTTTGTCGATATCATATCAAAATGTGTTCAGTCGGAACCTGAATTCCGGCCACCAATGTCGACGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCTCATGGCAGTGGTTCAAGTGAAGATTGA 2295 44.97 MGWKRSSRNGNLRICVQVLVGFVICSAHVLVGITNPGDVAAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIVNAANLGGELGDDLGLFASIQIIDLSNNHIGGSIPSSLPITMQNFFLSANAFTGNIPSSLSSLIHLTAMSLNDNKLSGQIPDSFQAISQLVNLDLSNNNLSGPLPPSASNLLALTTLNLQNNQLSGNLDVLRDLPLKNLKDGNPFNSSVTPAPTPSVSPPLKPAPAPRVSGAPPVSGAPPVSGAPPSSKRNPKKQADGPSAPEESSSGRNKKNTKRVVLITIAVILSFIILVLACVLFMPRCRRRRVDSSSKQHQIGASRGERENAGNQGSMHHTIDQIPNVPKAAVVRPKQEPQPVAQKVPKAHEERQKDMPRISAVPKKDHHEVDMNTLDVYLRPPPPPPPPPPPVEVVSAVPIVPAEVPPLKPPTKHKVTSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIFEYCSGGTLQDALHLDEEFRKKLSWNARIRIALGAARALEYLHEVCQPPVVHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTKYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFVDIISKCVQSEPEFRPPMSTVVQDLLNMIRREPHGSGSSED 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8515254 8523991 - CmaCh19G009720.1 Cma19g00972 315660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00972 764 Pfam Protein tyrosine and serine/threonine kinase 477 748 IPR001245 GO:0004672|GO:0006468
Cma19g00972 764 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515
Cma19g00972 764 MobiDBLite consensus disorder prediction 235 263 - -
Cma19g00972 764 Gene3D Phosphorylase Kinase; domain 1 446 551 - -
Cma19g00972 764 Gene3D Ribonuclease Inhibitor 146 220 IPR032675 -
Cma19g00972 764 Gene3D Ribonuclease Inhibitor 42 145 IPR032675 -
Cma19g00972 764 MobiDBLite consensus disorder prediction 334 358 - -
Cma19g00972 764 MobiDBLite consensus disorder prediction 224 293 - -
Cma19g00972 764 PANTHER OS01G0253100 PROTEIN 23 211 IPR045271 GO:0004714|GO:0006468
Cma19g00972 764 PANTHER OS01G0253100 PROTEIN 200 763 IPR045271 GO:0004714|GO:0006468
Cma19g00972 764 MobiDBLite consensus disorder prediction 327 393 - -
Cma19g00972 764 SUPERFAMILY Formin homology 2 domain (FH2 domain) 419 429 - -
Cma19g00972 764 ProSiteProfiles Protein kinase domain profile. 474 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00972 764 SUPERFAMILY Protein kinase-like (PK-like) 449 748 IPR011009 -
Cma19g00972 764 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 211 - -
Cma19g00972 764 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 200 763 - -
Cma19g00972 764 Gene3D Transferase(Phosphotransferase) domain 1 553 760 - -
Cma19g00972 764 SUPERFAMILY L domain-like 52 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00972 - - - csv:101213734 1152.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma11g01861 Cma19g00972 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01861 Cma-Chr11:12371461 Cma19g00972 Cma-Chr19:8515254 0 dispersed
Cma19g00972 Cma-Chr19:8515254 Cma18g00568 Cma-Chr18:3822270 1.27E-165 dispersed
Cma19g00972 Cma-Chr19:8515254 Cma03g00479 Cma-Chr3:4813485 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g488 . Blo15g00549 . Bda13g00653 . . . . Cmo11g01937 Cmo19g01004 . . . . . Cpe15g00790 Cpe04g00762 Bhi05g01832 . . . . . . . . . . . . . . . . Cone12ag1436 . Csa07g00420 . . . . . . Bpe14g00667 . Bma02g01363 Bma12g00749 . . . Cma11g01861 Cma19g00972 Car11g01549 Car19g00763 . . . . . . . . . . . . . . . . Lsi11g01525 . Chy01g00369 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma18g00568 . 383 676 Strubbelig Receptor Gene Family AT1G11130 54.1 7.4e-86 315.8
Cma13g00416 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.8e-85 313.2
Cma17g00644 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.0e-83 307.8
Cma08g00837 CCT,CST 429 717 Strubbelig Receptor Gene Family AT1G11130 52.9 4.5e-83 306.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma14g01226 . 1 718 Strubbelig Receptor Gene Family AT1G53730 60.1 1.2e-211 733.8
Cma01g00022 CCT 526 1249 Strubbelig Receptor Gene Family AT1G53730 60.6 5.0e-210 728.4
Cma08g00837 CCT,CST 31 730 Strubbelig Receptor Gene Family AT1G53730 59.1 1.6e-179 627.1
Cma17g00644 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.7 1.5e-177 620.5
Cma13g00416 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.6 6.9e-135 478.8
Cma11g01861 CST 518 810 Strubbelig Receptor Gene Family AT1G53730 56.3 2.9e-88 323.9
Cma14g01226 . 11 713 Strubbelig Receptor Gene Family AT3G14350 51.8 1.8e-180 630.2
Cma01g00022 CCT 536 1253 Strubbelig Receptor Gene Family AT3G14350 50.6 7.5e-179 624.8
Cma08g00837 CCT,CST 39 728 Strubbelig Receptor Gene Family AT3G14350 53.5 7.0e-161 565.1
Cma17g00644 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.0 1.4e-156 550.8
Cma11g01861 CST 517 818 Strubbelig Receptor Gene Family AT3G14350 51.6 1.8e-76 284.6
Cma18g00568 . 332 706 Strubbelig Receptor Gene Family AT4G22130 81.6 2.2e-173 606.3
Cma13g00416 . 344 711 Strubbelig Receptor Gene Family AT4G22130 80.2 4.4e-169 592.0
Cma14g01226 . 402 725 Strubbelig Receptor Gene Family AT4G22130 63.2 2.1e-118 423.7
Cma01g00022 CCT 943 1265 Strubbelig Receptor Gene Family AT4G22130 63.4 4.6e-118 422.5
Cma17g00644 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.9 6.0e-118 422.2
Cma08g00837 CCT,CST 423 732 Strubbelig Receptor Gene Family AT4G22130 66.0 3.9e-117 419.5
Cma11g01861 CST 486 821 Strubbelig Receptor Gene Family AT4G22130 55.6 4.8e-107 386.0
Cma19g00972 CST 459 754 Strubbelig Receptor Gene Family AT4G22130 60.9 1.5e-105 380.9
Cma04g00965 . 378 695 Strubbelig Receptor Gene Family AT4G22130 55.4 4.3e-100 362.8
Cma03g00479 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.5 1.4e-98 357.8
Cma14g00431 . 404 726 Strubbelig Receptor Gene Family AT4G22130 52.0 2.5e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69348 PF07714 PK_Tyr_Ser-Thr 7.80E-42 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma19g00972 Cma_Chr19 FPKM 13.94417 14.767524 13.1511 15.770622 13.658792 14.744404 16.088013 12.84678 12.532535 13.097008