Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00972 ATGGGTTGGAAGAGATCCTCGAGGAATGGCAATTTGAGGATCTGCGTGCAAGTTTTAGTCGGATTCGTTATCTGTTCAGCTCATGTTCTTGTCGGAATTACGAATCCTGGGGATGTTGCTGCTATTAGTAGCTTACATACTGCACTGGGACTCCCCAGTCTTCCTGGATGGGGCATTGGGCAAGATCCTTGCGGTGACGCATGGCAAGGTGTTGTATGTAATGATTCAAGCATCATTAAAATAATTGTTAATGCTGCTAATTTGGGAGGTGAACTGGGTGACGACTTGGGATTGTTTGCTTCGATCCAAATAATTGATTTAAGCAACAATCATATAGGGGGAAGTATTCCATCCAGTTTACCCATTACCATGCAGAACTTTTTTCTTTCAGCGAACGCGTTCACTGGAAATATTCCGAGTTCATTATCGTCTTTGATTCATCTGACAGCAATGTCGTTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTCAAGCCATTTCTCAATTGGTGAATTTGGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGCTAGCAATTTATTGGCACTGACCACCCTGAATTTGCAGAACAATCAGCTGTCGGGAAACCTCGATGTTCTGCGAGACCTTCCACTAAAAAACTTAAAGGATGGAAATCCATTTAATTCTTCTGTTACTCCGGCGCCTACTCCTTCTGTATCTCCCCCATTAAAGCCAGCACCAGCACCACGAGTTTCAGGAGCACCGCCCGTTTCAGGTGCACCACCAGTTTCTGGAGCTCCACCGTCCTCTAAACGAAACCCAAAGAAACAGGCTGATGGACCATCAGCACCAGAGGAATCCAGTTCTGGAAGAAACAAGAAAAACACTAAAAGGGTTGTTTTGATAACAATTGCAGTAATTTTGTCATTCATAATTTTGGTTTTGGCATGTGTGCTGTTTATGCCGAGGTGCAGAAGGAGAAGAGTTGATAGTAGTTCCAAGCAACATCAGATAGGTGCTTCTAGGGGCGAGAGAGAGAACGCTGGAAATCAGGGATCCATGCACCATACAATTGATCAGATACCAAATGTTCCAAAAGCAGCAGTTGTGAGGCCAAAGCAGGAACCTCAACCAGTGGCTCAGAAGGTTCCAAAAGCTCATGAAGAAAGACAGAAAGATATGCCAAGAATCAGCGCTGTTCCAAAGAAGGATCATCATGAAGTAGATATGAACACACTCGATGTCTATCTAAGGCCTCCCCCTCCCCCACCACCACCACCACCTCCTGTTGAAGTGGTCTCTGCCGTGCCCATTGTTCCAGCTGAAGTTCCTCCCTTGAAGCCTCCCACTAAACATAAAGTTACCTCAACTTTTGCAAAATCTTTTACCATTGCATCCCTTCAGCAATATACAAACAGCTTTTCGCAAGAGAATCTTCTGGGAGAAGGAATGCTTGGGAGTGTATATAGAGCACAGCTTCCCAGTGGGAAGTTACTGGCCGTCAAGAAACTGGATAAGAGAGCATTCAGTCAGCAAAAGGACGATGAATTTCTGGAGTTAGTGAATAATATCGATAGAATTCGGCACGCTAATGTGGTTGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTTCGAGTATTGCAGCGGTGGAACATTGCAGGATGCCCTGCACTTAGATGAAGAGTTCAGAAAGAAACTTTCATGGAATGCTCGCATTAGAATTGCTCTTGGAGCTGCAAGAGCCTTGGAGTATCTACACGAGGTCTGTCAGCCGCCTGTAGTTCATAGGAATTTCAAGTCTGCAAATGTCCTGCTTGATGATGATCTTTCCGTGCGCGTTTCAGATTGTGGTCTGGCTCCATTGATATCAAAAGGAGCTGTTAGTCAGCTATCTGGTCAGCTTCTAACGAAATATGGTTACGGAGCACCAGAATTTGAATCAGGAGTTTATACACTTGAGAGCGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGTCGGATGTCTTATGACAGAACGAGGACCCGAGGTGAGCAGTTTCTAGTCAGATGGGCGATTCCTCAGCTTCACGACATAGAGGCATTGACAAGCATGGTCGATCCTTCACTCAACGGTCGATACCCTGCCAAGTCGTTATCATACTTTGTCGATATCATATCAAAATGTGTTCAGTCGGAACCTGAATTCCGGCCACCAATGTCGACGGTTGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCTCATGGCAGTGGTTCAAGTGAAGATTGA 2295 44.97 MGWKRSSRNGNLRICVQVLVGFVICSAHVLVGITNPGDVAAISSLHTALGLPSLPGWGIGQDPCGDAWQGVVCNDSSIIKIIVNAANLGGELGDDLGLFASIQIIDLSNNHIGGSIPSSLPITMQNFFLSANAFTGNIPSSLSSLIHLTAMSLNDNKLSGQIPDSFQAISQLVNLDLSNNNLSGPLPPSASNLLALTTLNLQNNQLSGNLDVLRDLPLKNLKDGNPFNSSVTPAPTPSVSPPLKPAPAPRVSGAPPVSGAPPVSGAPPSSKRNPKKQADGPSAPEESSSGRNKKNTKRVVLITIAVILSFIILVLACVLFMPRCRRRRVDSSSKQHQIGASRGERENAGNQGSMHHTIDQIPNVPKAAVVRPKQEPQPVAQKVPKAHEERQKDMPRISAVPKKDHHEVDMNTLDVYLRPPPPPPPPPPPVEVVSAVPIVPAEVPPLKPPTKHKVTSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIFEYCSGGTLQDALHLDEEFRKKLSWNARIRIALGAARALEYLHEVCQPPVVHRNFKSANVLLDDDLSVRVSDCGLAPLISKGAVSQLSGQLLTKYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFVDIISKCVQSEPEFRPPMSTVVQDLLNMIRREPHGSGSSED 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8515254 8523991 - CmaCh19G009720.1 Cma19g00972 315660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00972 764 Pfam Protein tyrosine and serine/threonine kinase 477 748 IPR001245 GO:0004672|GO:0006468
Cma19g00972 764 ProSiteProfiles Leucine-rich repeat profile. 195 217 IPR001611 GO:0005515
Cma19g00972 764 MobiDBLite consensus disorder prediction 235 263 - -
Cma19g00972 764 Gene3D Phosphorylase Kinase; domain 1 446 551 - -
Cma19g00972 764 Gene3D Ribonuclease Inhibitor 146 220 IPR032675 -
Cma19g00972 764 Gene3D Ribonuclease Inhibitor 42 145 IPR032675 -
Cma19g00972 764 MobiDBLite consensus disorder prediction 334 358 - -
Cma19g00972 764 MobiDBLite consensus disorder prediction 224 293 - -
Cma19g00972 764 PANTHER OS01G0253100 PROTEIN 23 211 IPR045271 GO:0004714|GO:0006468
Cma19g00972 764 PANTHER OS01G0253100 PROTEIN 200 763 IPR045271 GO:0004714|GO:0006468
Cma19g00972 764 MobiDBLite consensus disorder prediction 327 393 - -
Cma19g00972 764 SUPERFAMILY Formin homology 2 domain (FH2 domain) 419 429 - -
Cma19g00972 764 ProSiteProfiles Protein kinase domain profile. 474 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00972 764 SUPERFAMILY Protein kinase-like (PK-like) 449 748 IPR011009 -
Cma19g00972 764 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 23 211 - -
Cma19g00972 764 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 1-RELATED 200 763 - -
Cma19g00972 764 Gene3D Transferase(Phosphotransferase) domain 1 553 760 - -
Cma19g00972 764 SUPERFAMILY L domain-like 52 216 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01861 Cma19g00972 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01861 Cma-Chr11:12371461 Cma19g00972 Cma-Chr19:8515254 0 dispersed
Cma19g00972 Cma-Chr19:8515254 Cma18g00568 Cma-Chr18:3822270 1.27E-165 dispersed
Cma19g00972 Cma-Chr19:8515254 Cma03g00479 Cma-Chr3:4813485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69348 PF07714 PK_Tyr_Ser-Thr 7.80E-42 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00972 - - csv:101213734 1152.89