Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00978 ATGGGTGGTTGTGTCTCTACAAGCAGTCATAGTACTTGTAGTAGCCAGAGCAATGGGGAATCAGTTTCTTCTTCATGTATGGGAATTAGATTTCAAGGTCGAAAGAGATCGAACTCCGACCATGTTTATGTTCTTCAGAATCTTCCTTCAGCTCCCAACAGAATCTTCTTGAATGGAAAGAGTAATTCTTCTTGCATTTTCACCCAACAAGGTCGCAAGGGCGTAAACCAGGACGCCATGGTTGTTTGGGAAGATTTCATGTCGGACGACACAATCTTTTGTGGTGTTTTTGATGGTCATGGACCTTACGGTCACCTTGTTTCTCGACAAGTGAGGGATACATTGCCTATAAAGTTGCTGTCGTTTTTTCAGTCTCCTCAGTTGAATCAGAATGTCTCTGGTAAAACCTGTTTCCAGAGGAATTTGAAGACATCTCGAGAATGTGAAGATTCTGAGAAGGATTGTTTTGTCGAGGACTCGCAGAATTCGGTATGGCGAGATGCATTCTTGAACTCGTATAAAGCTATGGATAAGGAGTTGAGATCACATCCTAATGTGGACTGCTTTTGTAGTGGTAGTACTGCAGTCACCATAGTTAAACAGGGGTCAAATCTGTTCATGGGGTACATCGGGGACTCTCGAGCAATCCTTGCCTCGAAGGACGCCAATGATTCAACAGTGGCGGTCCAGTTGACTGTGGATCTTAAGCCAGATTTGCCAAGAGAAGCTGAAAGAATAAAACGGTGTAAAGGTCGGGTGTTTGCATTGCAAGATGAGCCTGAAGTGCCAAGGGTGTGGTTACCTTTCGACGATGCACCCGGTTTAGCCATGGCTCGTGCTTTTGGAGACTTCTGTTTGAAAGAATATGGAGTTATCTCTATACCTGAATTCTCACATCGAACCCTCACCGACGCTGATCAGTTCGTCGTTCTTGCATCAGATGGGGTATGGGATGTGTTGAGCAATGAAGAGGTGGTCGACATAGTGTCCTCGGCCTCATCCCGGGCATCAGCTGCGAGATCCGTGGTGGACTCTGCTGCTCGTGAATGGAAACTCAAATACCCGACCTCGAAAATGGATGACTGTGCTGTTGTCTGCTTATTTTTGGATGGGATGATGGACTCCGAATCCGATTGTGATGAACAAGGCTTCTCGTCTGCAACGTCGCGTAGTATCCATTCGGGTGCTGCTATCGAATCAGATGATGGCCAGAAGTCTGAGCCATGTCTGCAAAGGAATAACACTGTCAGATCATCTGAGGAAAACAAAACTTATGGGGGATTAGCTGATGATGACAGAGAGATTGGTGAAGCTGTACCTGCAGAAGATCAAAACTGGTCGGGTTTGGAAGGCGTCACTCGAGTGAACTCGCTCGTTCAACTTCCTAGATTTTCCGACAAAAGTCCAGTGTCGTAG 1416 46.12 MGGCVSTSSHSTCSSQSNGESVSSSCMGIRFQGRKRSNSDHVYVLQNLPSAPNRIFLNGKSNSSCIFTQQGRKGVNQDAMVVWEDFMSDDTIFCGVFDGHGPYGHLVSRQVRDTLPIKLLSFFQSPQLNQNVSGKTCFQRNLKTSRECEDSEKDCFVEDSQNSVWRDAFLNSYKAMDKELRSHPNVDCFCSGSTAVTIVKQGSNLFMGYIGDSRAILASKDANDSTVAVQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRTLTDADQFVVLASDGVWDVLSNEEVVDIVSSASSRASAARSVVDSAAREWKLKYPTSKMDDCAVVCLFLDGMMDSESDCDEQGFSSATSRSIHSGAAIESDDGQKSEPCLQRNNTVRSSEENKTYGGLADDDREIGEAVPAEDQNWSGLEGVTRVNSLVQLPRFSDKSPVS 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8542875 8545847 - CmaCh19G009780.1 Cma19g00978 315666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00978 471 MobiDBLite consensus disorder prediction 1 24 - -
Cma19g00978 471 PANTHER ALPHABET, ISOFORM E-RELATED 1 459 - -
Cma19g00978 471 MobiDBLite consensus disorder prediction 424 439 - -
Cma19g00978 471 MobiDBLite consensus disorder prediction 396 444 - -
Cma19g00978 471 CDD PP2Cc 62 369 IPR001932 -
Cma19g00978 471 SUPERFAMILY PP2C-like 54 371 IPR036457 -
Cma19g00978 471 SMART PP2C_4 47 367 IPR001932 -
Cma19g00978 471 Pfam Protein phosphatase 2C 158 347 IPR001932 -
Cma19g00978 471 MobiDBLite consensus disorder prediction 407 422 - -
Cma19g00978 471 ProSiteProfiles PPM-type phosphatase domain profile. 63 369 IPR001932 -
Cma19g00978 471 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 459 - -
Cma19g00978 471 Gene3D - 57 371 IPR036457 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00117 Cma19g00978 CCT
Cma11g01867 Cma19g00978 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00978 Cma-Chr19:8542875 Cma20g00555 Cma-Chr20:2692702 0 dispersed
Cma11g01867 Cma-Chr11:12414538 Cma19g00978 Cma-Chr19:8542875 0 wgd
Cma19g00978 Cma-Chr19:8542875 Cma02g00117 Cma-Chr2:588445 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00978 - - csv:101204594 830.861