Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00982 ATGGGTTTGTGGGGCCGCCTCGTAGCTGACCAACCACAACACTTAAACATATTCTCTCTCTTCCATTCACCAGAAAAACACGAACTTCAAATCTTTTTCTCTTCTCTCATTCAACTTATAAACTTACCCCATTTCTTCTTCTACTCACATTCCCAACACGCCACCGCATCCGCCGCCGTCTACTTCCATATCACCGCCCCCGCTCCGCCGCTCGCTCGCTCGCTCGCTCTGTTTTTTCTTAATCCGGATAAACCCTGTTTCCGATTCAACTCCATTTCACTCTCGAATTCTCTGCTTCCTGCAAGTTTGCGAGCGAGAGGTGTGAGCTTAGAAACTGCTCTGTTTCCATCCATGGCGGAGGATAAGAAAACAGGGAAATCGAAGATGGTTCTTGACGAAACAACCCCACAACTGAAATTTTCAAAGAAGAAGATTGAAAAAGGTAAAGAACAATGGAAGCCTGTTTTAGATGATGCTTTCTTGTCCAGAAGACCTCTCAAGAAATTCTGTAGTTCAGATTTTCGAAACCCATTTCTTCAATCCCCTGTTTCTGTTTCTCCTCCTTCTAAGATCCAATTTCCTTTTGATTTTCAAGCATCTCAGCAATCAACAACAACAACCCAATTCGTTTCTTCGTCCTCTTCTTCTTCTTCTTCTTCCTCTCATTTTCCGGCGTTTGGGTCGCCGGAGCAGCAGATGATTTCTTTTAGTTCCAATCAGCAACAGGGGATCGGCTATCCACCGTACTTCCTCGGTGGCGGCGACCCGGTGGCTACCCAGCAGAGACTTTTCAAGTATTGGAGCGATGCTTTTCATTTGAGTCCGAGAGGGAGAGCTAAGGTGATGAGCAGAATGGGGCCAGATGGGTGTCATTTGTTTGGACCGCCGGTGCAGCCCTTAAGCGCCACCAAGCTTTACAGAGGAGTTAGGCAGCGGCATTGGGGGAAATGGGTGGCTGAAATTCGTCTCCCTCGTAATCGAACTCGCCTTTGGCTAGGAACCTTCGACACCGCCGAAGACGCCGCCATGGCTTACGATCGCGAGGCCTTTAAACTACGAGGCGAAAATGCTCGACTCAATTTCCCCGAACGTTTCCTCAACAAAAACACTCCAAAAACAGAGACGAAAACAGAGCACACTAATCCAATTACAGAGGAGGCTCATGAAGACAGCGCTGTCGTTCTTCCGCCGTCGGAGGAAGAGAAACCGGATGAGCAGTTGACTGAGAGCGGAGGCGCATCGGAGGCGCCGGAGATGGTTTGGGGAGAAATGGAAGAGGCTTGGTTTAATGCAATTCCGGCAGGGTGGGGTCCGGGAAGCGCTGTTTGGGATCATTTAGACCCAACAAACAATTTGATTCTTCAATCACAATTCCCTTTTGGTTCATCAAATCAGCCACAGATTAAGGAGTCCGATGATAATCAGAACATGGTAGAGAATTCTGAATCGGCTTCGTCATCGGCTCCGATGAAGCTGTTCTTATGGAAAGATCAAGATTGA 1500 47.93 MGLWGRLVADQPQHLNIFSLFHSPEKHELQIFFSSLIQLINLPHFFFYSHSQHATASAAVYFHITAPAPPLARSLALFFLNPDKPCFRFNSISLSNSLLPASLRARGVSLETALFPSMAEDKKTGKSKMVLDETTPQLKFSKKKIEKGKEQWKPVLDDAFLSRRPLKKFCSSDFRNPFLQSPVSVSPPSKIQFPFDFQASQQSTTTTQFVSSSSSSSSSSSHFPAFGSPEQQMISFSSNQQQGIGYPPYFLGGGDPVATQQRLFKYWSDAFHLSPRGRAKVMSRMGPDGCHLFGPPVQPLSATKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPERFLNKNTPKTETKTEHTNPITEEAHEDSAVVLPPSEEEKPDEQLTESGGASEAPEMVWGEMEEAWFNAIPAGWGPGSAVWDHLDPTNNLILQSQFPFGSSNQPQIKESDDNQNMVENSESASSSAPMKLFLWKDQD 499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8562446 8563945 + CmaCh19G009820.1 Cma19g00982 315670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00982 499 Pfam AP2 domain 306 354 IPR001471 GO:0003700|GO:0006355
Cma19g00982 499 SMART rav1_2 305 368 IPR001471 GO:0003700|GO:0006355
Cma19g00982 499 MobiDBLite consensus disorder prediction 459 488 - -
Cma19g00982 499 Gene3D AP2/ERF domain 305 364 IPR036955 GO:0003700|GO:0006355
Cma19g00982 499 PRINTS Ethylene responsive element binding protein signature 306 317 IPR001471 GO:0003700|GO:0006355
Cma19g00982 499 PRINTS Ethylene responsive element binding protein signature 328 344 IPR001471 GO:0003700|GO:0006355
Cma19g00982 499 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 399 496 - -
Cma19g00982 499 MobiDBLite consensus disorder prediction 369 408 - -
Cma19g00982 499 SUPERFAMILY DNA-binding domain 305 363 IPR016177 GO:0003677
Cma19g00982 499 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 126 390 - -
Cma19g00982 499 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 126 390 - -
Cma19g00982 499 MobiDBLite consensus disorder prediction 459 499 - -
Cma19g00982 499 MobiDBLite consensus disorder prediction 367 415 - -
Cma19g00982 499 CDD AP2 304 363 IPR001471 GO:0003700|GO:0006355
Cma19g00982 499 ProSiteProfiles AP2/ERF domain profile. 305 362 IPR001471 GO:0003700|GO:0006355
Cma19g00982 499 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 399 496 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma17g00096 Cma-Chr17:469795 Cma19g00982 Cma-Chr19:8562446 5.15E-27 dispersed
Cma19g00982 Cma-Chr19:8562446 Cma02g00110 Cma-Chr2:555860 5.66E-74 wgd
Cma19g00982 Cma-Chr19:8562446 Cma20g00187 Cma-Chr20:905975 7.97E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36936 PF00847 AP2 3.50E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00982 - - bhj:120078099 591.652