Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00987 ATGGCGTCTGGTTCAACTGGTCGCCCTAATTCGGGCTCTAAAGGGTTTGATTTTGGTACCGACGATGTTCTTTGTTCTTATGAGGACTACGGCAACCAGGAATCTTCCAACGGTAGCCATAGCGACCTCTCCGTCGCGAATTCTAGCAAGGATTTTCACAAAAGCAGAATATCTACCGTTTATCCTGCTGCTGCTTATGGTCAGCCAGAAGATTCCATGAAACAAGATGTGATTTCTACTGTTGAGAACAGCATGAAAAAGTATTCTGATAACATTTTGCGTTTTCTTGAGGGAATAAGCTCGCGCCTATCACAACTTGAACTGAATTACTACAACCTTGATAAATCTGTTGGAGAAATGCGATCTGACTTGATTCGTGACCACGAAGAGGCAGATTTGAAGCTTAAATCTCTTGAGAAGCATCTACAAGAAGTCCACAGGTCTGTGCAGATTATAAGAGACAAGCAAGAGCTCGTCGAGACTCAGAAAGACTTGGCCAAACTTCATCTTCTGCAGAAGGAGTCGTCTTTGTCGAGCCATTCGCATTCAAACGAGGAGAGAGCTTCACCTGGTGCCTTTGATCCTAAGAAGAATGAAATTCCGTCCAAGAATCCCAATCAGCAACTAGCTCTTGCCCTGCCGCACCAGATTGTCCCACAGCAACATCCACCTCCTCCAGCAGCTTTGCCGGAGAATGTGCCCCAACAGCAACCTTATTACATCCAGCATCCTCAGAGCCAACATCAAATGACCAATGCCCAGCTAAGTCAAACTCCACCACCACCACAACAGTTCAGTCAGTATCAACAACAATGGACGCAGCAGCCACCTCAACAGGCACAACCACCACAACAGCATCCTTCTATGCAACCTCAGATCAGGCTGCCGCCTACTTCAGTCTACTCTTCTTATTCGATGAATCAACCGACTTCTATGCCAGAGACTCCGCCTATGCAAGTGTCATTTTCACCTATTCCTCAACCGGGTTCGAGCCGCATAGACACCGTGCAATATGGATATGTTGGAAGTGCTGGTACTATGCCCCAGCATCCTCCTCAAGTCAAAAATGCTTTTGGTGGAGGACCACAAGCCGGAGAAGGATATTTACCTTCTGGACCACAATCTGGGCTTTCCTCGGGAGGTGCATATATGATATACGATAGGGAAAGTGGAAGACCACCGCACCATCCTCCGCAACCTCAGCAACCACCACACCATCCTCCGCAACCACAACAACCACCACACCATCCTCCTCAGCCCCAACAACCACACTTCAACCAAAGTGGATACCCTCCGGCCAATGTTCAGATTCCTCAGCATCCATCAGGTCCGCACGTTATGGCCAGGAATCATCTGAATCATTCGCATTTTATGCGTAACCAGAACCATCCCTACGGCGAAATAGTTGATAAACTTGTTGGGATGGGTTTCAGGAGTGACCACATTGCCAGTGTAATTCATAGGATGGAGGAGAGCGGGCAACCTATCGATTTCAACGCTGTTCTAGATGGGTTGAGTAATTCTGGAGGATTCCACTGTGTTCTTCCTTCTCGTATATATATATATATGTGCCTTCACACCCATTCCTTCGATTTCGCACTGCGATCTATGGCGTCTGGTTCAGCAGGCCGCCCTAATTCCGCCCCCAAATCGTTTGATTTTGGTTCTGATAATATCCTTTGCTCATTTGAGGACTACACTAAACAGGAACCTTCAAACGGTAGCCATAGCGATCCAGTCTCCGTTGCCAATTCTAGCAAGGATTTTCACAAGAGTAGAATGTCTACTGTATTCCCTGGTGCTGCATATGGTCAACCAGATGATTCCATTAATCAAGATGTGATTGCTACTGTTGAGAACAGCATGAAAAAGCATTCTGATAACCTTTTGCGTTTTCTCGAGGGGATAAGTTCACGCCTATCACAACTTGAACTGTATTGCTACAACCTTGATAAATCTGTTGGAGAAATGCGGTCTGACTTGGCCCGTGACCATGAAGAGGCAGATTCGAAGCTTAAATCTATTGAGAAGCATGTACAAGAGGTTCACAGATCTGTACAGATTATCAGAGACAAGCAAGAGCTTGCTGAGACTCAAAAAGACTTGGCTAAACTTCAGGTCCCACAGAAAGAGCCATCTTTGTCGAGCCATTCGCAGACAAATGAGGAGAGGGTTTCAACTGATCCTAAAAAGAACGAAAATCCATCTGAGATTCACAACCAGCAATTAGCTTTGGCCTTGCCACATCAGATCGTCCCGCAGCAAAATCCTATGACACCCCCTTCAGCAGCTTTGCCTCAGAATGTGCCTCAACAACACCAATCTTACTACATTTCTTCATCCCAATTGCCTGGTCAACAACCATCCCATATCCAGCATGCTCAGAACCAGTATATCTCATCTGACTCCCATCACCGGGCATCACAACCTCAAGACGTTTCGCAGATGACCAATCCCCAGCTAAGTCAAACTCCACAACCATTTAATCAGTACCAACAACAATGGGCGCAGCCACCATCTCAGCCGGCACAACCACCACAACAGGCTTCTATGCAACCTCAGATCAGACCACCGCCTACTTCAGTCTACCCTTCTCCTTACCCACCAAATCAACCAACTTCTATGCCAGAGACTCTGTCAAGCAGCATGCCTATGCAAATGTCTTTTGCATCTATTCCTCAACCTGGTTCAAGCCGTGCGGATGCAGTGCCTTATGGGTATGCTGCTGCAAGTGGTGGTTCTGCTCCACAGCAACCTCCTCAAGTGAAAAATGCTTATGGACCAGCAACAGGCGAGGGCTATATGCCTCCTGGACAACAGCCTGCGCTATCCTCTGGAGGAGCATATATGATGTATGATAGGGAAAGCGGAAGACCGCCACACCATCTCCCTCAACAGCCACATCATCCGTCTCAGCAATCCCACTTCAATCAAAGTGGATATCCTCCGGCCAATGCACCTCCTCAGGTTCCTCCTCAAGCTCCAACAGGCCCCCATGTCTCAGCCAGGAATCCAAGTCATTCACATTTAATCGAAAAACTGGTTGGCATGGGTTTCAGGGGCGACCATGTTGCCAGTATAATTCAGAGAATGGAGGACAGTGGGCAAACGGTCGACTTCAACGCAGTTCTAGACAGATTGAGTACTCCTGCAGGTCCAGGGCCCCAAAGAGCGTGCTCCCTCACCAACTTCCCATCTCCCTCCTTTTGTTACCTGTGCTCTGAGTTTCAGTTTGTTGTGAAGTCTCCAACGAAGGACATGGAGGAATCTCTGCTGGGAGGAGAAGGTAGCAGTAGCTCCAGCTCTCGACGTCAGATTCCGCATGTCAGGTTTAGGCGCCGCTCCGATGCCATCGCTTATGGCTCGGCGTACCAAAGAGCAGCTGCTCTTGTGGATCTGGCTGAAGATGGCATTGGTATACCCGAGAAAATTCTTGATCAGTCAAACTTTCAGAGTGCTGCAAGACTATACTTCATTTTCATTAGATTTGATTTTCTTTGGTCCTTAAATTTCTTTGCGCTGATAATTCTAAATTTCTTTGAGGAACCTTTGTGGTGCTCCAAATACGAGACACATTCTTGTAATGATAGGGAGTATTTCTTTCTTGGGCAGTTGCCGTACTTAACAGCTGTTGAATCTCTTATATATGAGGCAACGACTCTCATAATACTCACGATACACACTTTTTTCCCAATTTCATATGAAGGTGCTCAGCTTTATTGGAAAAATCCCTTGAACCAATTGAAGGTCGTTTGCACAATTATTTTGGTTGCCGATTTTGTCATTTATACCCTATATTTGTCGCCAGTGGCCTTCGATTATCTTCCATTCAGAGTTGCACCATATATAAGGGTTGTCTTTTTCATCATGAATATCAGGCATCTCCGGGAGAGCATCATCATCCTGGCTGGAATGCTTGGCACATACTTGAATGTCTTGGCTCTAGGGCTTTTGTTTCTTCTGTTTTCCAGCTGGTTGGCATATGTTATATTTGAGGATACACAGCAGGGAAAAATAGTATTTACTTCTTTTGGAGCCACATTATATCAAATGTTTATTTTGTTCACTACATCCAATAGTCCAGATGTTTGGATACCTGCCTACAAGGCATCTCGTTGGTATTGTCTCTTTTTTGTTCTTTACGTGCTGTTGGGAGTTTACTTCGTTACAAACTTGATTCTTGCTGTTGTATACGATAGCTTTAAAAGTCAGCTTGCTAAACAAATTTCCGAGATGGACCGCTTGAGGAAAAGTATATTGGCCAAAGCTTTTGGTCTTATGGATACTAATAACGTTGGGTTTATCAATAAAGAGCAGTGCCTTGCACTTTTAGAAGAACTTAACAGATACAGGTCTTTGCCGAAAGTATCAAGGGATGATTATGAGTTAATATTTGATGAGCTGGATGACAGTCGTGATTTTAAGATTAATATGAATGAGTTCGCTGATCTTTGCAATGCTATAGCCTTGAAGTTCCAGAAGGAGGACATTCCTTCATGGTTTGAAGGGTATCCTTCGATCTACCATTCAGTTTTCTCAAAAAAGTTGAAAGCATTTGTGCGGAGCCCCACATTTGGATATGCTGTATCTTTTATCCTCATATTGAACCTGGTTGCTGTTATTATTGAAACAACTCTTGATATAGCAAACAATGCAGGTCAGAAAGCATGGCAAGAACTCGAGTTTGTATTTGGTTGGATATATGTAGTTGAAATGGCTCTAAAAATCTACTCGTTTGGATTTTTGAACTATTGGAGAGATGGCCAAAATCAGTTTGATTTCCTTGTCACGTGGATTATAGTGATTGGAGAAACTATAACTTTCGTTGCACCCAGTGGACTAACTTTTCTTTCAAATGGAGAATGGATTCGCTACCTTCTGATAGCAAGAATGTTACGCTTGATAAGGCTCCTAATGCATGTCCGGCAATATCGAGCTTTTCTTGCTACCTTTTTAACTCTCATCCCTAGTTTGATGCCATATCTAGGAACCATTTTCTGTGTCCTCTGTCTTTATTGCAATCTTGGTGTGCAGGTCTTTGGAGGACTTGTTAATGCTGGAAATGCCACTTTGTCTAAGACTGATCTGGATGAGGATGACTACCTACTTTTCAATTTTAACGACTATCCTAATGGCATGGTGACACTGTTCAATTTGCTAGTTATGGGAAACTGGCAAGCCTGGATGCAGAGCTACAAGGAATTAACAGGAAGCATTTGGACCCTCGTTTATTTTATCAGTTTCTACCTAATAACCGTTTTGCTGCTCTTAAATTTGGTTGTAGCCTTTGTCTTGGAGGCATTCTTTGCTGAATTGGATATTGAATCTTCAGAAAATGGCGAAGAACAGGATCAGGACGGAGATAGTAGAAAGGATCGTCGACGTTTTGTTGGGTACGACAATAACACTAAAACTCGGAGTCGCAAAGTTGACATTCTTCTCCATCATATGTTGAGTGCAGAACTGGATAAGGATTCCGATTAG 5484 44.47 MASGSTGRPNSGSKGFDFGTDDVLCSYEDYGNQESSNGSHSDLSVANSSKDFHKSRISTVYPAAAYGQPEDSMKQDVISTVENSMKKYSDNILRFLEGISSRLSQLELNYYNLDKSVGEMRSDLIRDHEEADLKLKSLEKHLQEVHRSVQIIRDKQELVETQKDLAKLHLLQKESSLSSHSHSNEERASPGAFDPKKNEIPSKNPNQQLALALPHQIVPQQHPPPPAALPENVPQQQPYYIQHPQSQHQMTNAQLSQTPPPPQQFSQYQQQWTQQPPQQAQPPQQHPSMQPQIRLPPTSVYSSYSMNQPTSMPETPPMQVSFSPIPQPGSSRIDTVQYGYVGSAGTMPQHPPQVKNAFGGGPQAGEGYLPSGPQSGLSSGGAYMIYDRESGRPPHHPPQPQQPPHHPPQPQQPPHHPPQPQQPHFNQSGYPPANVQIPQHPSGPHVMARNHLNHSHFMRNQNHPYGEIVDKLVGMGFRSDHIASVIHRMEESGQPIDFNAVLDGLSNSGGFHCVLPSRIYIYMCLHTHSFDFALRSMASGSAGRPNSAPKSFDFGSDNILCSFEDYTKQEPSNGSHSDPVSVANSSKDFHKSRMSTVFPGAAYGQPDDSINQDVIATVENSMKKHSDNLLRFLEGISSRLSQLELYCYNLDKSVGEMRSDLARDHEEADSKLKSIEKHVQEVHRSVQIIRDKQELAETQKDLAKLQVPQKEPSLSSHSQTNEERVSTDPKKNENPSEIHNQQLALALPHQIVPQQNPMTPPSAALPQNVPQQHQSYYISSSQLPGQQPSHIQHAQNQYISSDSHHRASQPQDVSQMTNPQLSQTPQPFNQYQQQWAQPPSQPAQPPQQASMQPQIRPPPTSVYPSPYPPNQPTSMPETLSSSMPMQMSFASIPQPGSSRADAVPYGYAAASGGSAPQQPPQVKNAYGPATGEGYMPPGQQPALSSGGAYMMYDRESGRPPHHLPQQPHHPSQQSHFNQSGYPPANAPPQVPPQAPTGPHVSARNPSHSHLIEKLVGMGFRGDHVASIIQRMEDSGQTVDFNAVLDRLSTPAGPGPQRACSLTNFPSPSFCYLCSEFQFVVKSPTKDMEESLLGGEGSSSSSSRRQIPHVRFRRRSDAIAYGSAYQRAAALVDLAEDGIGIPEKILDQSNFQSAARLYFIFIRFDFLWSLNFFALIILNFFEEPLWCSKYETHSCNDREYFFLGQLPYLTAVESLIYEATTLIILTIHTFFPISYEGAQLYWKNPLNQLKVVCTIILVADFVIYTLYLSPVAFDYLPFRVAPYIRVVFFIMNIRHLRESIIILAGMLGTYLNVLALGLLFLLFSSWLAYVIFEDTQQGKIVFTSFGATLYQMFILFTTSNSPDVWIPAYKASRWYCLFFVLYVLLGVYFVTNLILAVVYDSFKSQLAKQISEMDRLRKSILAKAFGLMDTNNVGFINKEQCLALLEELNRYRSLPKVSRDDYELIFDELDDSRDFKINMNEFADLCNAIALKFQKEDIPSWFEGYPSIYHSVFSKKLKAFVRSPTFGYAVSFILILNLVAVIIETTLDIANNAGQKAWQELEFVFGWIYVVEMALKIYSFGFLNYWRDGQNQFDFLVTWIIVIGETITFVAPSGLTFLSNGEWIRYLLIARMLRLIRLLMHVRQYRAFLATFLTLIPSLMPYLGTIFCVLCLYCNLGVQVFGGLVNAGNATLSKTDLDEDDYLLFNFNDYPNGMVTLFNLLVMGNWQAWMQSYKELTGSIWTLVYFISFYLITVLLLLNLVVAFVLEAFFAELDIESSENGEEQDQDGDSRKDRRRFVGYDNNTKTRSRKVDILLHHMLSAELDKDSD 1827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8582629 8604774 + CmaCh19G009870.1 Cma19g00987 315675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00987 1827 Coils Coil 121 148 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 780 838 - -
Cma19g00987 1827 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 1 509 - -
Cma19g00987 1827 PANTHER FORMIN-LIKE PROTEIN (DUF1421) 1 509 - -
Cma19g00987 1827 PANTHER FORMIN-LIKE PROTEIN (DUF1421) 537 1058 - -
Cma19g00987 1827 Gene3D - 1424 1497 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 704 735 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 780 881 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 348 448 - -
Cma19g00987 1827 SMART efh_1 1460 1488 IPR002048 GO:0005509
Cma19g00987 1827 SMART efh_1 1419 1447 IPR002048 GO:0005509
Cma19g00987 1827 MobiDBLite consensus disorder prediction 909 1004 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 1783 1800 - -
Cma19g00987 1827 SUPERFAMILY EF-hand 1411 1502 IPR011992 -
Cma19g00987 1827 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 537 1058 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 174 204 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 243 316 - -
Cma19g00987 1827 Gene3D - 1302 1423 - -
Cma19g00987 1827 Gene3D - 1648 1810 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 967 983 - -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 395 425 - -
Cma19g00987 1827 Gene3D - 1514 1647 IPR027359 -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 839 873 - -
Cma19g00987 1827 CDD EFh 1420 1484 IPR002048 GO:0005509
Cma19g00987 1827 Pfam UBA-like domain (DUF1421) 465 508 IPR010820 -
Cma19g00987 1827 Pfam UBA-like domain (DUF1421) 1010 1048 IPR010820 -
Cma19g00987 1827 MobiDBLite consensus disorder prediction 1779 1800 - -
Cma19g00987 1827 ProSiteProfiles EF-hand calcium-binding domain profile. 1415 1450 IPR002048 GO:0005509
Cma19g00987 1827 SUPERFAMILY Voltage-gated potassium channels 1522 1768 - -
Cma19g00987 1827 Pfam Ion transport protein 1177 1404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma19g00987 1827 Pfam Ion transport protein 1523 1768 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01878 Cma19g00987 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01878 Cma-Chr11:12454312 Cma19g00987 Cma-Chr19:8582629 0 transposed
Cma11g01877 Cma-Chr11:12446716 Cma19g00987 Cma-Chr19:8582629 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00987 K16900 - csv:101206980 1286.55