Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00989 ATGGTGGTTCCTCTCGGCCCCGGCAAGTTCTACGGCAGCAGCCTCCCTCGTCCGCGCTATTACATCGATGTCAAGCTCAACAACGAGCGTATTGATCCACCTACGCCGGTCCTCGATCCGCTTCTCTCATGGGCAAACGAGGCTCATTGGTCTATGGGTGGCCTCAGCTTCAATCGCCTGAGGCTTCAAGGTCGAATCGAAGGTAATGTCCACAAACTTCGAGCCGAGCGCGAGAAGGTTGTTAAGCTGGACTCTGCGCCAAAGAGATCTAACCCTGACGACGAAGCTGCGGACGATCGCCAATTCAAGAAGTCGACATCTTTATCTCCACCGCCGGCGCCGATGGCAGCCAAGAGACGGCGATTTATGGCTCTGTTTGACGATGATGATGATGATGTTGGCGTGTACAAGGAAGAGACTGGAGTTGTGAAGAGGAGGTTGGTGAAGAAGCTGGGAGATGATTTTGATCGAGTGGCTGCAGAGAGTAAGGGCAATCAATTAAAGAGGGATAAAAGCTCGGAAATCAATGGGGTTTGTGAATCTGTAATGAAGATCGTTGAAGAGATTAACGATGAAAATACAAGGGGGAAAAAGGTCAACACTGAAAGAAAACGGAAGAGTAGTGGAAAAGTGGAGACTGTGCCCCTCTGCAAGCTTTTTTCATTGCAAAAGGATGGCAGCCTCTTGCTCTTGGCCATGGGGACTTCACTTTTTTACAAAACGAAAGAACTGTTTGAACTTCTCAGTCAGGCCAGAACCCATCAAACCTTGGGAGTGTATCAAGAAGCAGAAAAGCGTAAATCTCCGGCCACCCAAATGAAGAAGAAGAAGAAGTTCCCGCTTGGGATGTGTATCAAGACTGTATATATGCAATTTCATCCTCTTCAAAATTCTCTCCCGCTTCCGATCCAAACAGTTCTTTTGATCATGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACGCAGTTTCTTCTGCGCTGTAATTTCGATTCTAATCTCCATTTCCATCTCAGTCTCGGCTACAGAGTTCGTCTTCAACACCAATTTCACTTCCACTAATACTTTGCTCTTCGGCAACGCCACAATTGAGTCTTCTGTTCTTATTCTCACTAGAGATACCCCTTTCTCCATCGGCCGTGCCCTTTACCCCTTTAATATTCCCATCTTTTCCTCCAATTCTTCATTTTCCTTTGCAACTTCTTTCATCTTTTCTGTCACCCCTCAGCCAAATCTTCTCCCCGGCCATGGATTTGCCTTTCTCTTCACACCCTCTACTGGAATCAATGGCACCAGCTCGGCTCAGCATTTGGGGCTTTTCAATTTCACCAATAATGGCAGCCCCAATAACCATGTCTTCGCCGTTGAGTTCGACACTTTCCAAAATCAAGAGTTCAATGACACCAATGACAACCATGTGGGCGTGGATTTGAATTCTCTCCAGTCTACTGTTTCCGCTGCAGCAGGGTTTTGGAGCGAACCAGATGATGGAGAATTCAAGCAGCTGGAGATCAATAATGGAGAAACTTATCAGGTTTGGATTGAATGTCTAGATTCTCTGCTTAATATTACAATGGCTGAAGTGGGAGTGAAAAAACCTAGAAAGCCATTGATTTCTCTGTCTGTTAATTTTTCTGGATTGCTTTTGGATAAGATGTATGTGGGATTTACAGCAGCCACAGGGCAATTAGTTCAAAGCCATAAGATATTATCTTGGAGCTTTAGTTCCACTAACTTTTCTATTGCTGATGCTTTAGTGATAACGAATTTGCCATCTTTTACTCCTCAAAAGCTGGGCTCCATTTTCGAGTCGATATCTTTCATATTGGGGATAACCGTGGGTGGTGCTGGACTTGTATTTCTATGTACTGTTGTTGTTGTAATTACCAAAAGAAGGGGACGAAAGAAACCAGAGGATGATGAAATTGAAGAGTGGGAGTTAGAATATTGGCCGCATCGGTTTGCTTATGAAGATGTTTATGAAGCAACAGATGGGTTCTCAGAAGGCAATGTGATTGGGTTTGGGCGCAATGGGAAGGTCTATAAAGGGACCTTAGGGAGATCAAAAGTTGCTGTGAAGAGAATCTGTGTTGAAGGTGAGAGTGGGATGAGGGAGTTTGTGGCTGAGATTTCAAGCCTGGGAAGATTACAGCATAGAAATCTTGTGAAGCTTATAGGATGGTGTAAGAAGGAGAAAGGAAGCTTAATCTTAATGTATGATTACATGGAAAATGGAAGTCTAGACAAGAAGCTATTTGAGTGTGATGAGAATGCAATGCTGAGTTGGGAGGAAAGGATGAAGGTTTTGAGAGATGTAGCCACTGGGCTGCTATATCTGCACCAAGGTTGGGATTACAAGGTTCTACATAGAGATATAAAGCCCAACAACGTGCTACTTGACAAGGACATGAATGCGAAGTTAGGAGACTTCGGGTTGGCTCGAATGCAACCCCACGAGAAAACGGCAGACACAACTCAAGTGATGGGAACTGTTGGGTATATGGCACCTGAGGTGGTTCGAACAGGTCGAGTATCGGCACAGGCAGACGTTTTCGGGTTCGGGGTGTTGGTTTTGGAGGTGGTATGTGGGAGGAGAGCAATAGAAGAGGGGAAGCCATGGTTGATAGATTGGATAATGGAGAGGAATGAGGTTGGATTTGTAGTTGATGAGAGATTGAAAGTTGGTGGGAATGAGATTGATGAAATGGAGAGAATGGTTTGTTTGGGGTTATTGTGTGCGCAACCTGAGGCTGGTTCAAGGCCAACAATGCAACAAGTTGTGAACATTTTGTGTGAGGGAAATGGAAACGGAAATGGTTCAAATGATGGATTGTTGAACAGATTAAGATCAACAAGAGCACTGTCTGAGATTTATGGAGGCAACCATTGCCAGCAGCATCCAACGTTTGAACAAATCAAAACATCTTCTTCTTCAACATCGCTCATTGATTCGGATATTTTAAGGATTGGCCGCTAG 2976 44.72 MVVPLGPGKFYGSSLPRPRYYIDVKLNNERIDPPTPVLDPLLSWANEAHWSMGGLSFNRLRLQGRIEGNVHKLRAEREKVVKLDSAPKRSNPDDEAADDRQFKKSTSLSPPPAPMAAKRRRFMALFDDDDDDVGVYKEETGVVKRRLVKKLGDDFDRVAAESKGNQLKRDKSSEINGVCESVMKIVEEINDENTRGKKVNTERKRKSSGKVETVPLCKLFSLQKDGSLLLLAMGTSLFYKTKELFELLSQARTHQTLGVYQEAEKRKSPATQMKKKKKFPLGMCIKTVYMQFHPLQNSLPLPIQTVLLIMSSSSSSSSSSSRSFFCAVISILISISISVSATEFVFNTNFTSTNTLLFGNATIESSVLILTRDTPFSIGRALYPFNIPIFSSNSSFSFATSFIFSVTPQPNLLPGHGFAFLFTPSTGINGTSSAQHLGLFNFTNNGSPNNHVFAVEFDTFQNQEFNDTNDNHVGVDLNSLQSTVSAAAGFWSEPDDGEFKQLEINNGETYQVWIECLDSLLNITMAEVGVKKPRKPLISLSVNFSGLLLDKMYVGFTAATGQLVQSHKILSWSFSSTNFSIADALVITNLPSFTPQKLGSIFESISFILGITVGGAGLVFLCTVVVVITKRRGRKKPEDDEIEEWELEYWPHRFAYEDVYEATDGFSEGNVIGFGRNGKVYKGTLGRSKVAVKRICVEGESGMREFVAEISSLGRLQHRNLVKLIGWCKKEKGSLILMYDYMENGSLDKKLFECDENAMLSWEERMKVLRDVATGLLYLHQGWDYKVLHRDIKPNNVLLDKDMNAKLGDFGLARMQPHEKTADTTQVMGTVGYMAPEVVRTGRVSAQADVFGFGVLVLEVVCGRRAIEEGKPWLIDWIMERNEVGFVVDERLKVGGNEIDEMERMVCLGLLCAQPEAGSRPTMQQVVNILCEGNGNGNGSNDGLLNRLRSTRALSEIYGGNHCQQHPTFEQIKTSSSSTSLIDSDILRIGR 991
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8609121 8613626 + CmaCh19G009890.1 Cma19g00989 315677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00989 991 PANTHER - 331 981 - -
Cma19g00989 991 ProSiteProfiles Protein kinase domain profile. 666 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00989 991 SUPERFAMILY Protein kinase-like (PK-like) 645 930 IPR011009 -
Cma19g00989 991 CDD lectin_legume_LecRK_Arcelin_ConA 342 577 IPR001220 GO:0030246
Cma19g00989 991 MobiDBLite consensus disorder prediction 82 102 - -
Cma19g00989 991 SUPERFAMILY Concanavalin A-like lectins/glucanases 340 578 IPR013320 -
Cma19g00989 991 Gene3D - 340 588 - -
Cma19g00989 991 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 331 981 - -
Cma19g00989 991 MobiDBLite consensus disorder prediction 82 115 - -
Cma19g00989 991 ProSitePatterns Protein kinases ATP-binding region signature. 672 693 IPR017441 GO:0005524
Cma19g00989 991 SMART serkin_6 666 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00989 991 ProSitePatterns Serine/Threonine protein kinases active-site signature. 787 799 IPR008271 GO:0004672|GO:0006468
Cma19g00989 991 Pfam Legume lectin domain 342 578 IPR001220 GO:0030246
Cma19g00989 991 Gene3D Transferase(Phosphotransferase) domain 1 742 941 - -
Cma19g00989 991 Pfam Protein kinase domain 667 927 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g00989 991 Gene3D Phosphorylase Kinase; domain 1 635 741 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00989 Cma20g00202 CCT
Cma02g00097 Cma19g00989 CCT
Cma19g00989 Cma20g00202 ECH
Cma02g00097 Cma19g00989 ECH
Cma11g01881 Cma19g00989 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01881 Cma-Chr11:12473256 Cma19g00989 Cma-Chr19:8609121 0 dispersed
Cma19g00989 Cma-Chr19:8609121 Cma14g00124 Cma-Chr14:532341 2.52E-152 dispersed
Cma11g01879 Cma-Chr11:12469561 Cma19g00989 Cma-Chr19:8609121 2.11E-91 wgd
Cma13g00642 Cma-Chr13:6083816 Cma19g00989 Cma-Chr19:8609121 0 wgd
Cma18g00370 Cma-Chr18:2011296 Cma19g00989 Cma-Chr19:8609121 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69349 PF00069 Pkinase 6.70E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00989 - - csv:101216388 1056.97