Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00993 ATGGCAGACACATCACACCATTCATCAGTGTTTCAGAAGATATGTGGCCATTCTCACCTCACTTCTAGGCTTTCCCCTGGCTTTCAGTCCATACGTTATAGTACAACAGGTGTACATGCTAATGGAGTCTTGGAGAATCTCTTAAAGACATCTTATCATGGTACTGGCTTGGCTGGAGTTTCACCTACTTCTCCGTTTCTTGTACAAGCTCCTTCTGAGAAAGGTGCAGCTGGGTTTGCTGTGGATTTTCTCATGGGAGGAGTATCTGCTGCTGTTTCGAAAACTGCTGCTGCTCCAATTGAGCGTGTCAAACTGCTGATACAAAATCAGGATGAGATGCTTAAAACTGGTAGGCTATCTGAGCCATACAAAGGAATTACTGACTGCTTTGCTCGAACAATTAAAGATGAAGGAGTCATTGCCCTATGGAGGGGAAACACAGCAAACGTTATCCGATACTTCCCCACACAAGCTTTGAATTTTGCCTTCAAGGATTACTTCAAGAGGCTGTTCAACTTCAAGAAAGACAGAGATGGTTACTGGAAATGGTTTGCTGGGAATTTGGCCTCTGGTGGTGCTGCTGGTGCTTCATCTCTTTTATTTGTTTATTCCCTTGATTATGCTAGAACTCGTTTAGCCAATGATGCTAAGGCCGCTAAAAAGGGTGGTGAGAGACAGTTTAACGGTCTTGTTGATGTTTACAAGAAAACCCTTAAATCTGATGGCATTGCTGGGCTGTACCGTGGATTTAACATCTCTTGTGTTGGAATTATCGTGTATCGTGGTCTTTACTTCGGAATGTATGATTCGTTGAAGCCCGTGGTTCTGGTTGGCGAGTTGCAGGATAGTTTCCTTGCTAGTTTCTTGCTTGGATGGTGTATCACAATTGGAGCTGGTTTGGCGTCGTACCCTATTGATACCGTCCGAAGAAGAATGATGATGACCTCAGGTGAAGCAGTCAAGTACAATAGCTCCTTGGACGCATTCAAACAGATCGTTAAGAATGAGGGTACTAAATCTCTATTCAAGGGTGCTGGGGCAAACATTTTGCGTGCTGTTGCCGGTGCTGGTGTGTTGGCTGGGTATGATAAGCTTCAGCTCCTTGTTCTTGGCAAGAAATATGGTTCTGGCGGTGGCGGTTAA 1143 44.62 MADTSHHSSVFQKICGHSHLTSRLSPGFQSIRYSTTGVHANGVLENLLKTSYHGTGLAGVSPTSPFLVQAPSEKGAAGFAVDFLMGGVSAAVSKTAAAPIERVKLLIQNQDEMLKTGRLSEPYKGITDCFARTIKDEGVIALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNLASGGAAGASSLLFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYKKTLKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLKPVVLVGELQDSFLASFLLGWCITIGAGLASYPIDTVRRRMMMTSGEAVKYNSSLDAFKQIVKNEGTKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGGG 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8627086 8630411 - CmaCh19G009930.1 Cma19g00993 315681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00993 380 Gene3D Mitochondrial carrier domain 80 375 IPR023395 -
Cma19g00993 380 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 25 379 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma19g00993 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 286 368 IPR018108 -
Cma19g00993 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 77 170 IPR018108 -
Cma19g00993 380 ProSiteProfiles Solute carrier (Solcar) repeat profile. 182 274 IPR018108 -
Cma19g00993 380 PRINTS Adenine nucleotide translocator signature 79 91 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma19g00993 380 PRINTS Adenine nucleotide translocator signature 123 144 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma19g00993 380 PRINTS Adenine nucleotide translocator signature 156 168 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma19g00993 380 PRINTS Adenine nucleotide translocator signature 182 195 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma19g00993 380 PRINTS Adenine nucleotide translocator signature 287 303 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Cma19g00993 380 PANTHER ADP,ATP CARRIER PROTEIN 1, MITOCHONDRIAL-LIKE 25 379 - -
Cma19g00993 380 SUPERFAMILY Mitochondrial carrier 78 364 IPR023395 -
Cma19g00993 380 Pfam Mitochondrial carrier protein 181 274 IPR018108 -
Cma19g00993 380 Pfam Mitochondrial carrier protein 78 174 IPR018108 -
Cma19g00993 380 Pfam Mitochondrial carrier protein 283 369 IPR018108 -
Cma19g00993 380 PRINTS Mitochondrial carrier protein signature 82 95 IPR002067 GO:0055085
Cma19g00993 380 PRINTS Mitochondrial carrier protein signature 95 109 IPR002067 GO:0055085
Cma19g00993 380 PRINTS Mitochondrial carrier protein signature 145 165 IPR002067 GO:0055085
Cma19g00993 380 PRINTS Mitochondrial carrier protein signature 197 215 IPR002067 GO:0055085
Cma19g00993 380 PRINTS Mitochondrial carrier protein signature 247 265 IPR002067 GO:0055085
Cma19g00993 380 PRINTS Mitochondrial carrier protein signature 291 313 IPR002067 GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00531 Cma-Chr8:3075419 Cma19g00993 Cma-Chr19:8627086 0 dispersed
Cma08g00532 Cma-Chr8:3079821 Cma19g00993 Cma-Chr19:8627086 0 dispersed
Cma12g00641 Cma-Chr12:3411411 Cma19g00993 Cma-Chr19:8627086 8.05E-64 dispersed
Cma18g00019 Cma-Chr18:76002 Cma19g00993 Cma-Chr19:8627086 3.69E-130 dispersed
Cma19g00993 Cma-Chr19:8627086 Cma12g00646 Cma-Chr12:3422973 3.77E-36 dispersed
Cma19g00993 Cma-Chr19:8627086 Cma13g01057 Cma-Chr13:8027109 3.54E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00993 K05863 - csv:101212128 676.396