Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00995 ATGAGCAGTGTTTGTGCTGAGGAACAGAAATTTCAGTTTCAATTTCAACTGCCTTCTTCTTGTTCTTCGATTCTTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAAGAAGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGCGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACCGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAAGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGATGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAATTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCCACTTCCTCGCCGACATCAACGCTTATCGGAATGTCTCATCTCTCCCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGATTTCGAGGTACAATCCAGATCCGTCCAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCACTTTAGCCGCCTCCGCCTCAAGACAGACGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGAACAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGTCTCCGCCGCATCGGTGAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGATGGGCCTCCGCCTCTGCCTCCGCCTCGGATCCGGATCTCGGATGGGTTAACGATCTTCTGATGTAA 1092 49.45 MSSVCAEEQKFQFQFQLPSSCSSILEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPMSNFQGGSCSSPNKRNSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNATLAASASRQTIPWIDVSSLNTEEQLQFVLSPSTPNVSAASVNFSVNNKGNADNGWASASASASDPDLGWVNDLLM 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8638814 8639905 + CmaCh19G009950.1 Cma19g00995 315683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00995 363 SMART c3hfinal6 110 136 IPR000571 GO:0046872
Cma19g00995 363 SMART c3hfinal6 145 168 IPR000571 GO:0046872
Cma19g00995 363 Gene3D - 110 173 - -
Cma19g00995 363 PANTHER UNKEMPT FAMILY MEMBER 46 362 IPR045234 -
Cma19g00995 363 ProSiteProfiles Zinc finger C3H1-type profile. 111 137 IPR000571 GO:0046872
Cma19g00995 363 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 46 362 - -
Cma19g00995 363 SUPERFAMILY CCCH zinc finger 109 139 IPR036855 GO:0046872
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g01284 Cma-Chr12:9983593 Cma19g00995 Cma-Chr19:8638814 1.53E-65 dispersed
Cma19g00995 Cma-Chr19:8638814 Cma14g00450 Cma-Chr14:2142180 7.39E-59 dispersed
Cma11g01912 Cma-Chr11:12641174 Cma19g00995 Cma-Chr19:8638814 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36937 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00995 K23047 - csv:101211149 567.385