Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g00995 | ATGAGCAGTGTTTGTGCTGAGGAACAGAAATTTCAGTTTCAATTTCAACTGCCTTCTTCTTGTTCTTCGATTCTTGAGGACATTAACGGTGAAATGTGCTCTGATTCGCCGCGATTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTCAACGGCGAGGATGTAGCGGAAGAAGACGGCGATCCGTATTCGTCCGATCATTTTCGGATGTATGAGTTTAAGGTGTGGCGGTGTACTCGTAGTCGGAGCCATGACTGGACGGATTGTCCGTTTGCTCATCCTGGAGAGAAGGCGCGGCGACGAGATCCTCGTCGGTTTCATTACTCCGGCACGATGTGTCCGGATTTTCGACGCGGCGGTTGTGACCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTCGAGTGTTGGCTTCATCCAGCGAGATATCGGACCGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAAGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGATGAGTAATTTTCAAGGCGGCTCTTGTTCTTCGCCGAATAAGAGGAATTCTACTCTCAGATCGGCCGCCGCTGGTTCGAACCACGGCTGTTTATTTTGCCATTGCGGCGGAGCCGCCACTTCCTCGCCGACATCAACGCTTATCGGAATGTCTCATCTCTCCCCGCCACTCTCTCCGCCACTCTCGCCTGTAAAACCTCAGTCGCTAAATGGATTTTCACCGATTTCGAGGTACAATCCAGATCCGTCCAAGTTAAATGGAGTAATAAGCTATAAAGATTCAATGACCGAGCTCATGAACTCAATTGAATCCATGAATATCGACGAATTGAACGCCACTTTAGCCGCCTCCGCCTCAAGACAGACGATTCCTTGGATCGACGTTTCGTCTCTCAACACTGAAGAACAACTCCAGTTTGTTCTCTCACCTTCCACTCCAAATGTCTCCGCCGCATCGGTGAACTTTTCCGTCAATAACAAAGGTAACGCCGACAATGGATGGGCCTCCGCCTCTGCCTCCGCCTCGGATCCGGATCTCGGATGGGTTAACGATCTTCTGATGTAA | 1092 | 49.45 | MSSVCAEEQKFQFQFQLPSSCSSILEDINGEMCSDSPRFSFAVESLLQKFLPFNGEDVAEEDGDPYSSDHFRMYEFKVWRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPDFRRGGCDRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPMSNFQGGSCSSPNKRNSTLRSAAAGSNHGCLFCHCGGAATSSPTSTLIGMSHLSPPLSPPLSPVKPQSLNGFSPISRYNPDPSKLNGVISYKDSMTELMNSIESMNIDELNATLAASASRQTIPWIDVSSLNTEEQLQFVLSPSTPNVSAASVNFSVNNKGNADNGWASASASASDPDLGWVNDLLM | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8638814 | 8639905 | + | CmaCh19G009950.1 | Cma19g00995 | 315683 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g00995 | 363 | SMART | c3hfinal6 | 110 | 136 | IPR000571 | GO:0046872 | |
Cma19g00995 | 363 | SMART | c3hfinal6 | 145 | 168 | IPR000571 | GO:0046872 | |
Cma19g00995 | 363 | Gene3D | - | 110 | 173 | - | - | |
Cma19g00995 | 363 | PANTHER | UNKEMPT FAMILY MEMBER | 46 | 362 | IPR045234 | - | |
Cma19g00995 | 363 | ProSiteProfiles | Zinc finger C3H1-type profile. | 111 | 137 | IPR000571 | GO:0046872 | |
Cma19g00995 | 363 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 | 46 | 362 | - | - | |
Cma19g00995 | 363 | SUPERFAMILY | CCCH zinc finger | 109 | 139 | IPR036855 | GO:0046872 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma12g01284 | Cma-Chr12:9983593 | Cma19g00995 | Cma-Chr19:8638814 | 1.53E-65 | dispersed | |
Cma19g00995 | Cma-Chr19:8638814 | Cma14g00450 | Cma-Chr14:2142180 | 7.39E-59 | dispersed | |
Cma11g01912 | Cma-Chr11:12641174 | Cma19g00995 | Cma-Chr19:8638814 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36937 | None | None | None | None | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g00995 | K23047 | - | csv:101211149 | 567.385 |