Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00996 ATGATGAAGCGTTATGTTTACATCAACGACGATGAACCATCAAATGATCTTTTTTGCGATAACCGCATCTCGAACCGGAAATATACATTATTGAACTTTCTCCCTAAAAATTTATGGGAACAGTTCAGCCGCTTCATGAACCAATACTTTTTGTTAATTGCATGCCTACAGTTGTGGCCGCTTATAACTCCAGTTAACCCTGCCAGTACGTGGGGTCCACTTATTTTCATTTTTGCCGTGTCTGCAACAAAAGAGGCATGGGATGATTACAATAGATATTTATCAGACAAAAAGGCTAATGAGAAAGAAGTTTGGGTTGTGAAGCAGGGTACCAGAAAAACTATTCAAGCACAAGATATTCATGTTGGTAATTTAGTATGGCTCAGGGAGAATGATGAAGTGCCTTCTGATCTTGTTTTGATTGGTACCTCTGATCCTCAAGGAATTTGCTATATAGAGACATCTGCCCTTGATGGAGAAACTGACTTGAAGACAAGGGTCATACCCTCAGCTTGCATGGGAATAGATTTTGATCTATTAAACAAGATCAAGGGAGTTATAGAGTGTCCTATACCAGATAAGGATATTACAAGATTTGATGCAAACATTCGGTTATTTCCACCTTTCATCGACAATGATGTGTGCCCTTTGACAATAAAAAACACAATTCTTCAGTCATGTTACTTGCGGAACACAGAGTGGGTCTGTGGAGTAGCCGTTTACACAGGCAACGAAACCAAGCTTGGAATGAGCAGGGGTGTCCCAGAACCAAAACTTACGGCTATGGATGCAATGATCGACATGTTAACTGGTGCTATATTTGTTTTTCAACTTGTGGTGGTGGTTGTTCTAGGTATATCTGGTAATGTGTGGAAGGATTCTGAAGCCCGAAAGCTATGGTATGTGCAACATCCAGAGGAAGGTCCATGGTATGAGCTACTGGTTATCCCTCTTCGGTTTGAGCTTCTTTGTTCAATCATGATTCCCATTTCAATTAAGGTGTCTCTGGATCTTGTAAAGAGCTTATATGCAAAATTTATTGATTGGGACTATGATATGATTGACTACGAGTCTGGTATTCCTTCCCATGCTTCAAATACAGCAATAAGTGAGGACCTGGGACAAGTCGAATACATTTTGACCGATAAAACTGGTACCCTCACTGAAAATAAGATGATCTTCAGGAGATGTTGTATCAGTGGCATTTTTTATGGAAATGAAAATGGAGATGCCTTGAGAGATGAAAAGTTGCTCGATGCTATTGCAAGCAGCTCTCCGGATGTTATAAGATTTCTCACAATTATGGCAATATGTAATACAGTGGTGCCTACAAAAAGCAAATGTGGAAATATCGTGTACAAGGCACAATCACAGGATGAGGAGGCTCTCGTGAATGCTGCTGCTTATTTGAATATGGTATTTGTCAATAAGAATGCTGATATTCTAGAAATTCAGTTTAATGGGATGCTAAATAGATACGAGCTCCTAGATACACTCGAGTTCACATCTGAACGAAAAAGAATGTCTGTAGTCGTTAAAGATTGTCAGAATGGGAAGATTGTCCTCCTGTGTAAAGGAGCAGATGAGGCTATACTTCCTCATGCTTATGCCGGCCAGCAAACGAGAACATTTATGGAAGCCGTGGATCAGTATGCACAACTGGGTCTCCGCACATTATGTCTGGCTTGGCGTGAACTAGAGGAAGATGAGTATCGAGAATGGGCTCTTATGTTTAAAGAGGCTAATAACACATTGGTTGATCGGGAGTGGAGGTTAGCTGAAGTTTGCCTAAGAATCGAGTGCAATTTTGAAGTTCTTGGAGTTACTGCTATAGAAGATAGGCTACAGGATGGAGTCCCTGAAACAATTGAAACATTGAGAAGAGCAGGAATAAATTTCTGGATGCTCACCGGAGACAAGCAGAACACTGCCATTCAGATAGCTCTTCTATGCAACTTTATTTCACCAGAGCCCAAAGGACAGTTACTGTTAATTGATGGAAAAACGGAGGACGAAGTTTGTAGAAGTTTGGAGCGAGTTGTTCTAACTATGAAGACCACAACCTCAGAACCCAAGGATGTTGCTTTCGTTGTTGATGGCTTGGCTCTGGAAATTGCTCTGAAGAATCATCGTAGGGCTTTCACTGAATTAGCAATACTATCAAGAACCGCAATATGTTGTCGTGTGACTCCATCACAGAAGGCTCAGCTTGTGGAACTCTTAAAATCATGTGATTATAGAACACTGGCGATTGGAGATGGTGGGAATGACGTGAGGATGATTCAGCAAGCTGACATTGGAGTTGGCATTAGTGGAAGAGAAGGACTGCAGGCAGCTAGGGCAGCTGATTATAGTATTGGAAAGTTCAGGTTTCTGAAAAGATTGATTCTAGTTCATGGACGATACTCATACAACCGTACAGCATTCTTGTCACAATATTCTTTCTACAAATCCTTATTGATATGTTTTATCCAGATTTCTTTCTCCTTCCTCTCAGGTGTCTCTGGGACCAGTCTCTTTAATTCTGTTAGCTTGATGGCTTACAATGTTTTCTACACCAGTATCCCTGTATTAGTTAGCGTTCTCGACAAGGATCTCAGCGAAGAAACTGTGATGCAACATCCTCAGATTTTATTTTACTGCCAAGCTGGGAGGCTCTTAAATCCCAGCACATTTGCTGGATGGTTTGGTCGATCTCTATTTCATGCTGTTGTCGTGTTTGTGATTAGCATACATGCCTACGCTAATGAAAAGAGTGAAATGGTGGAGGTTTCAATGGTGGCACTATCTGGGTGCATTTGGTTACAGGCTTTTGTAGTGACTTTGGAGACCAATTCATTCACAATGTTGCAACTTATTGCCATATGGGGGAATTTAGCCGCTTTCTACGTAATCAATTGGATCTTCTGCGCCATTCCTTCATCTGGGATGTATACAATAATGTTCCGCTTATGCGGACAGCCATCTTATTGGATAACCATATTTCTAATAGTAGGCGTGGGAATGGGTCCACTTTTAGGCATCAAATACTTCAGATATACATACAGACCAAGCAAAATCAACACTCTTCAGCAGGCTGAACGTTTAGGTGGGCCGATCCTGTCGCTCAAAAACATTGAGCACCAGCCTCGGCCCATTGATGAGAAAGAAGATTCTCCACTGTTAATATCCCAGCCCAATAACAGAAACACAGTTTTCGAACCTCTATTATCAGACTCTCCAACTGCTGCCACTAGAAGATCTCTTGCTTCAAGATCCTCCTTTGATTTCTTTCAGACTCCGCCCAGTTATTCAATGAATAAGGATAAGTGA 3312 41.24 MMKRYVYINDDEPSNDLFCDNRISNRKYTLLNFLPKNLWEQFSRFMNQYFLLIACLQLWPLITPVNPASTWGPLIFIFAVSATKEAWDDYNRYLSDKKANEKEVWVVKQGTRKTIQAQDIHVGNLVWLRENDEVPSDLVLIGTSDPQGICYIETSALDGETDLKTRVIPSACMGIDFDLLNKIKGVIECPIPDKDITRFDANIRLFPPFIDNDVCPLTIKNTILQSCYLRNTEWVCGVAVYTGNETKLGMSRGVPEPKLTAMDAMIDMLTGAIFVFQLVVVVVLGISGNVWKDSEARKLWYVQHPEEGPWYELLVIPLRFELLCSIMIPISIKVSLDLVKSLYAKFIDWDYDMIDYESGIPSHASNTAISEDLGQVEYILTDKTGTLTENKMIFRRCCISGIFYGNENGDALRDEKLLDAIASSSPDVIRFLTIMAICNTVVPTKSKCGNIVYKAQSQDEEALVNAAAYLNMVFVNKNADILEIQFNGMLNRYELLDTLEFTSERKRMSVVVKDCQNGKIVLLCKGADEAILPHAYAGQQTRTFMEAVDQYAQLGLRTLCLAWRELEEDEYREWALMFKEANNTLVDREWRLAEVCLRIECNFEVLGVTAIEDRLQDGVPETIETLRRAGINFWMLTGDKQNTAIQIALLCNFISPEPKGQLLLIDGKTEDEVCRSLERVVLTMKTTTSEPKDVAFVVDGLALEIALKNHRRAFTELAILSRTAICCRVTPSQKAQLVELLKSCDYRTLAIGDGGNDVRMIQQADIGVGISGREGLQAARAADYSIGKFRFLKRLILVHGRYSYNRTAFLSQYSFYKSLLICFIQISFSFLSGVSGTSLFNSVSLMAYNVFYTSIPVLVSVLDKDLSEETVMQHPQILFYCQAGRLLNPSTFAGWFGRSLFHAVVVFVISIHAYANEKSEMVEVSMVALSGCIWLQAFVVTLETNSFTMLQLIAIWGNLAAFYVINWIFCAIPSSGMYTIMFRLCGQPSYWITIFLIVGVGMGPLLGIKYFRYTYRPSKINTLQQAERLGGPILSLKNIEHQPRPIDEKEDSPLLISQPNNRNTVFEPLLSDSPTAATRRSLASRSSFDFFQTPPSYSMNKDK 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8643941 8653135 - CmaCh19G009960.1 Cma19g00996 315684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00996 1103 Pfam Cation transport ATPase (P-type) 437 534 - -
Cma19g00996 1103 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 12 331 - -
Cma19g00996 1103 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 386 1058 - -
Cma19g00996 1103 SFLD p-type atpase 365 802 IPR044492 -
Cma19g00996 1103 Pfam Phospholipid-translocating P-type ATPase C-terminal 779 1018 IPR032630 -
Cma19g00996 1103 SUPERFAMILY HAD-like 375 806 IPR036412 -
Cma19g00996 1103 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 386 1058 - -
Cma19g00996 1103 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 12 331 - -
Cma19g00996 1103 Gene3D - 447 587 IPR023299 GO:0000166
Cma19g00996 1103 PRINTS P-type cation-transporting ATPase superfamily signature 153 167 - -
Cma19g00996 1103 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Cma19g00996 1103 PRINTS P-type cation-transporting ATPase superfamily signature 629 639 - -
Cma19g00996 1103 PRINTS P-type cation-transporting ATPase superfamily signature 751 770 - -
Cma19g00996 1103 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 1017 IPR023298 -
Cma19g00996 1103 Pfam E1-E2 ATPase 100 293 - -
Cma19g00996 1103 SFLD C1.7: P-type atpase like 365 802 - -
Cma19g00996 1103 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 571 IPR023299 GO:0000166
Cma19g00996 1103 Gene3D - 76 252 - -
Cma19g00996 1103 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 718 834 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma19g00996 1103 Pfam Phospholipid-translocating ATPase N-terminal 6 71 IPR032631 -
Cma19g00996 1103 SUPERFAMILY Calcium ATPase, transduction domain A 101 249 IPR008250 -
Cma19g00996 1103 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
Cma19g00996 1103 Gene3D - 603 791 IPR023214 -
Cma19g00996 1103 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 425 1024 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00996 Cma-Chr19:8643941 Cma07g01220 Cma-Chr7:6700783 0 dispersed
Cma11g01911 Cma-Chr11:12631499 Cma19g00996 Cma-Chr19:8643941 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00996 K01530 - csv:101210900 2077.75