Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g00998 ATGGGTCCTTACATCTCTCGCCGACTTGAAGAACGAAGTACAACGGCCGCCATGGTTGCCAAGGAAAAATCCGCCGCCAAGAACCTCCCTTCTCTCTGCAACAACACCTATGCTAAAGAACTCCATTTCCGAGGCGTTCGAAAGAGGCCTTGGGGCCGATACGCCGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGTACCTTCGACACGGCCGAGGAAGCGGCGCGTGCATACGACACCGCCGCCCGTCAGTTCCGCGGCGCTAAAGCCAAAACCAATTTCCCTCTGGAGGAGGAGCTTATCGACGTTTCTCCTCAGAAGATCAATCAAAGCCCTAGCCCTAGTAGTACCGTCGAGTCCTCTTCCTCTTCCAGCCAAGAAAAAACCCCCTCGCCGGAAATCGCCCGGAACTACGGCGCGACTGTCGGTGTCGGACGAACTTCTCCGTTCCTTCAGCCTCAGTTTTTGCATCAGGTCGGTTGCAATGTCTCCGCCGCCGCCTCCGCTGCCGGCGTTCGTCCTGTTTTGTTTATGGACGCTTTTGGTAGACCGGAGTTCGTGGCTCATGGCTATCCCATACGATTCGATCCGGCGACGGTGGATTTGACTGCTAGGTTCTCCGGCGGGACCCACAGTGATTCGGACTCATCGTCGGTTGTTGACTGCCGGCCGGAGAAGGAAATTCTGAATCTCGATCTCAATCTCGCTCCTCCGGTGGACGCTTGA 738 57.18 MGPYISRRLEERSTTAAMVAKEKSAAKNLPSLCNNTYAKELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLEEELIDVSPQKINQSPSPSSTVESSSSSSQEKTPSPEIARNYGATVGVGRTSPFLQPQFLHQVGCNVSAAASAAGVRPVLFMDAFGRPEFVAHGYPIRFDPATVDLTARFSGGTHSDSDSSSVVDCRPEKEILNLDLNLAPPVDA 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8657974 8658787 - CmaCh19G009980.1 Cma19g00998 315686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g00998 245 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Cma19g00998 245 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Cma19g00998 245 MobiDBLite consensus disorder prediction 108 136 - -
Cma19g00998 245 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 227 - -
Cma19g00998 245 Gene3D AP2/ERF domain 42 101 IPR036955 GO:0003700|GO:0006355
Cma19g00998 245 MobiDBLite consensus disorder prediction 105 138 - -
Cma19g00998 245 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Cma19g00998 245 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Cma19g00998 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4-LIKE 19 227 - -
Cma19g00998 245 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Cma19g00998 245 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Cma19g00998 245 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma19g00998 Cma20g00238 CCT
Cma02g00060 Cma19g00998 CCT
Cma02g00060 Cma19g00998 ECH
Cma19g00998 Cma20g00238 ECH
Cma11g01910 Cma19g00998 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g00998 Cma-Chr19:8657974 Cma20g00238 Cma-Chr20:1154440 1.92E-33 dispersed
Cma01g01222 Cma-Chr1:8835781 Cma19g00998 Cma-Chr19:8657974 1.14E-29 wgd
Cma11g01910 Cma-Chr11:12628044 Cma19g00998 Cma-Chr19:8657974 3.14E-102 wgd
Cma13g00627 Cma-Chr13:6021798 Cma19g00998 Cma-Chr19:8657974 2.01E-31 wgd
Cma18g00386 Cma-Chr18:2109848 Cma19g00998 Cma-Chr19:8657974 4.60E-30 wgd
Cma19g00998 Cma-Chr19:8657974 Cma07g00227 Cma-Chr7:1040268 1.13E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36938 PF00847 AP2 1.60E-14 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g00998 K09286 - csv:101210659 289.271