Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01006 ATGATTTCAAGGTCTTACACAAATCTTTTAGATTTGGCTTCTGGAAACTTTCCAGCAATGGAAGTGAAAAGGAAGCGGTTCCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGACGACGATCAGGCCTACAGTGTGACATCTGAAAACCCGTCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCCTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGGTTACCAGAAGATATGGAGGTTCTTTATGTCGGTTCTCTGAAAGTCGATATCCAACCGGACGAGCAAGATGAGGTATCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTGATATTTTGGAAAATTTTTATGATGGTTTCTGCAAGAGGAATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCGATGTGGGAAGCATATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTTGTAGAGGTCATCAACCCTGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCTACTTTCTTGAGAAGACGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGCACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATCGGATTTCACACTTTCGATTATGCTCGCCATTTCCTTTCTTGTTGCAGCAGAATGTTGGGTTTAGAATACCAGTCAAAAAGGGGCTATCTTGGATTGGAATACTACGGCAGGACGATTGGAATAAAGATAATGCCTGTTGGTATTCATATGAATCGGATTGAATCGGTTATGAAACTTGCAGACGAGGATTCCAAGACTAGGGAACTCACGCAGAAATTTGCAGGGAAGACGGTGGTGCTTGGTGTTGATGATATGGACATTTTCAAAGGTATTAACTTGAAATTGTTAGCCATGGAACAGATGTTAAAGCAACATCCAAAGTGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAACCCTGCCAGAGGCAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAATAAGGAGTATGGGCATCCTGGTTATGATCCAATAGTACTTCTCGACCGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGCGTAGCTGTCACTGCTGTTAGAGATGGCATGAACTTAACTCCTTATGAGTATGTTGTCTGTAGGCAGGGAATATCCACCTCTCAAAAATGCTTGAACTTCAGTGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATCGGGTGCACTCCATCACTGAGCGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGTACATCAGAGGCTTTTAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAAAAGCATTATCGTTATGTTGCTACACACGACGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGACATGGAGAGAACTTGCTCAGAACATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTCGGGCCGATAGTCGGGCCATTCTTTTGGACTACGATGGCACTGTGATGCCCCAAAACTCCATAAACAAGTCACCGAGCGAACAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATGCAAAAAATGTCGTCTTCATTGTCAGTGGACGAGGAAGGGACAGCTTAAGCAAGTGGTTTCACCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTCTTGAGGCAGTCACAAAATGAGGAGTGGAAGATCTGCGGCCAAAATTCTGATTTCGGATGGATGCAGATAGCAGAACCTGTTATGAAATTATACACCGAGGCTACTGATGGTTCATCAATCGAACGGAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGCTTTGGATCGTCCCAGGCGAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATTGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTTGTGGCTGAAAAAATCTTCTCATCAATGGCGGAGGATGGGAACCTTGCCGACTTCGTGTTGTGTATTGGCGACGACAGATCGGACGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATAATATTCTTTCTCCAACGGCGTCCGTTTTTGCCTGCACTGTTGGGCAAAAGCCAAGCAAAGCCAAATATTACTTGGACGACACAGCTGAAGTAATAAGCATGCTTGAATACCTGGCCGAAGCTTCTAGCCCATTGCCATCCTCTGAAGATGAAGAAGAAGGTCAAAACGCTTCTTGA 2577 43.0 MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPDEQDEVSQILLEKFRCIPTFLPPDILENFYDGFCKRNLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMNRIESVMKLADEDSKTRELTQKFAGKTVVLGVDDMDIFKGINLKLLAMEQMLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYDPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCTPSLSGAFRVNPWNVESTSEAFNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSEHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRADSRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFHPCKKLGIAAEHGYFLRQSQNEEWKICGQNSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGNLADFVLCIGDDRSDEDMFEIIGNALSSNNILSPTASVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSEDEEEGQNAS 858
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8674708 8677645 - CmaCh19G010060.1 Cma19g01006 315694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01006 858 TIGRFAM T6PP: trehalose-phosphatase 589 839 IPR003337 GO:0003824|GO:0005992
Cma19g01006 858 CDD GT20_TPS 60 543 IPR001830 GO:0003824|GO:0005992
Cma19g01006 858 Gene3D Glycogen Phosphorylase B; 314 527 - -
Cma19g01006 858 SUPERFAMILY HAD-like 590 839 IPR036412 -
Cma19g01006 858 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 546 - -
Cma19g01006 858 Pfam Trehalose-phosphatase 593 828 IPR003337 GO:0003824|GO:0005992
Cma19g01006 858 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED 1 851 - -
Cma19g01006 858 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 796 IPR006379 -
Cma19g01006 858 CDD HAD_TPP 591 831 - -
Cma19g01006 858 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 851 IPR001830 GO:0003824|GO:0005992
Cma19g01006 858 Gene3D Glycogen Phosphorylase B; 53 313 - -
Cma19g01006 858 Pfam Glycosyltransferase family 20 60 543 IPR001830 GO:0003824|GO:0005992
Cma19g01006 858 Gene3D - 718 852 IPR023214 -
Cma19g01006 858 Gene3D - 589 694 IPR023214 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01907 Cma19g01006 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01269 Cma-Chr1:9157325 Cma19g01006 Cma-Chr19:8674708 8.50E-139 dispersed
Cma04g00086 Cma-Chr4:429400 Cma19g01006 Cma-Chr19:8674708 0 dispersed
Cma10g00135 Cma-Chr10:613343 Cma19g01006 Cma-Chr19:8674708 0 dispersed
Cma16g01174 Cma-Chr16:8986427 Cma19g01006 Cma-Chr19:8674708 0 dispersed
Cma11g01907 Cma-Chr11:12613065 Cma19g01006 Cma-Chr19:8674708 0 wgd
Cma18g00443 Cma-Chr18:2444622 Cma19g01006 Cma-Chr19:8674708 4.87E-142 wgd
Cma19g01006 Cma-Chr19:8674708 Cma03g01336 Cma-Chr3:8580070 0 wgd
Cma19g01006 Cma-Chr19:8674708 Cma07g00170 Cma-Chr7:828739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01006 K16055 - csv:101209914 1667.9