Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma19g01006 | ATGATTTCAAGGTCTTACACAAATCTTTTAGATTTGGCTTCTGGAAACTTTCCAGCAATGGAAGTGAAAAGGAAGCGGTTCCCGCGGGTCATGACTGTTCCGGGTAATGTAGCTGAGCTTGACGACGATCAGGCCTACAGTGTGACATCTGAAAACCCGTCGTCAATTTCCTCAGATCGGATGATAATTGTAGCAAACCAGCTTCCTTTAAGAGCAAAGCGAAGGGAGGATGATAATTCCTGGAGTTTCAGTTGGAATGAAGATTCGTTGCTTTTGCAGCTTAAAGATGGGTTACCAGAAGATATGGAGGTTCTTTATGTCGGTTCTCTGAAAGTCGATATCCAACCGGACGAGCAAGATGAGGTATCCCAGATTTTGTTGGAGAAATTTAGGTGTATTCCTACATTTTTGCCTCCTGATATTTTGGAAAATTTTTATGATGGTTTCTGCAAGAGGAATTTGTGGCCTCTTTTTCATTATATGCTGCCATATTCTGCTGATCAGAAGGGTCGATTTGATCGCTCGATGTGGGAAGCATATGTATCAGCAAATAAGTTATTTTTCCAGAAAGTTGTAGAGGTCATCAACCCTGATGATGACTATATCTGGATCCATGATTACCATTTGATGGTATTGCCTACTTTCTTGAGAAGACGTTTTAACAGAGTTAAAATGGGATTTTTCCTTCATAGTCCATTTCCTTCATCTGAGATCTACCGCACCCTTCCTGTCAGAGAAGAGATTCTCAAGGCATTACTTAACTCTGATATCATCGGATTTCACACTTTCGATTATGCTCGCCATTTCCTTTCTTGTTGCAGCAGAATGTTGGGTTTAGAATACCAGTCAAAAAGGGGCTATCTTGGATTGGAATACTACGGCAGGACGATTGGAATAAAGATAATGCCTGTTGGTATTCATATGAATCGGATTGAATCGGTTATGAAACTTGCAGACGAGGATTCCAAGACTAGGGAACTCACGCAGAAATTTGCAGGGAAGACGGTGGTGCTTGGTGTTGATGATATGGACATTTTCAAAGGTATTAACTTGAAATTGTTAGCCATGGAACAGATGTTAAAGCAACATCCAAAGTGGCAGGGAAAGGCTGTACTGATCCAAATTGTAAACCCTGCCAGAGGCAAGGGAAGAGATTTACAAGAAATAGAAGATGAAATAAAAGAAAGCTGCAGAAGGATCAATAAGGAGTATGGGCATCCTGGTTATGATCCAATAGTACTTCTCGACCGGCACGTGCCAATTACTGAAAGGGTTGCTTATTATAGCATTGCTGAGTGCGTAGCTGTCACTGCTGTTAGAGATGGCATGAACTTAACTCCTTATGAGTATGTTGTCTGTAGGCAGGGAATATCCACCTCTCAAAAATGCTTGAACTTCAGTGGACCAAAAAAGAGCATGCTCGTCATATCCGAATTTATCGGGTGCACTCCATCACTGAGCGGAGCATTTCGTGTCAACCCATGGAATGTTGAAAGTACATCAGAGGCTTTTAATGAAGCAATCTCAATGGCTGATTCAGAGAAGCAGCTGCGACATGAAAAGCATTATCGTTATGTTGCTACACACGACGTGGCTTATTGGTCTCGTAGTTTCTTGCAAGACATGGAGAGAACTTGCTCAGAACATTTCAGGAGACGATGTTGGGGAATTGGTTTTAGTTTTGGATTCAGGGTTGTAGCTCTTGATCCCAATTTCAGAAAACTTTCAGTAGATGCCATTGTATCATCTTACAGTCGGGCCGATAGTCGGGCCATTCTTTTGGACTACGATGGCACTGTGATGCCCCAAAACTCCATAAACAAGTCACCGAGCGAACAGGTTATCTCTATCCTTAACACGCTTTGTGCAGATGCAAAAAATGTCGTCTTCATTGTCAGTGGACGAGGAAGGGACAGCTTAAGCAAGTGGTTTCACCCATGCAAGAAGCTTGGAATTGCAGCAGAACATGGATATTTCTTGAGGCAGTCACAAAATGAGGAGTGGAAGATCTGCGGCCAAAATTCTGATTTCGGATGGATGCAGATAGCAGAACCTGTTATGAAATTATACACCGAGGCTACTGATGGTTCATCAATCGAACGGAAGGAAAGTGCTTTGGTTTGGCAGTATCGAGATGCAGATCCTGGCTTTGGATCGTCCCAGGCGAAGGAGATGTTGGATCATTTAGAGAGTGTTTTGGCAAACGAACCTGTTGCAGTCAAAAGCGGCCAATTTATTGTAGAAGTGAAACCACAGGGGGTTACCAAAGGCCTTGTGGCTGAAAAAATCTTCTCATCAATGGCGGAGGATGGGAACCTTGCCGACTTCGTGTTGTGTATTGGCGACGACAGATCGGACGAGGACATGTTTGAAATAATTGGTAATGCGTTGTCCAGTAATAATATTCTTTCTCCAACGGCGTCCGTTTTTGCCTGCACTGTTGGGCAAAAGCCAAGCAAAGCCAAATATTACTTGGACGACACAGCTGAAGTAATAAGCATGCTTGAATACCTGGCCGAAGCTTCTAGCCCATTGCCATCCTCTGAAGATGAAGAAGAAGGTCAAAACGCTTCTTGA | 2577 | 43.0 | MISRSYTNLLDLASGNFPAMEVKRKRFPRVMTVPGNVAELDDDQAYSVTSENPSSISSDRMIIVANQLPLRAKRREDDNSWSFSWNEDSLLLQLKDGLPEDMEVLYVGSLKVDIQPDEQDEVSQILLEKFRCIPTFLPPDILENFYDGFCKRNLWPLFHYMLPYSADQKGRFDRSMWEAYVSANKLFFQKVVEVINPDDDYIWIHDYHLMVLPTFLRRRFNRVKMGFFLHSPFPSSEIYRTLPVREEILKALLNSDIIGFHTFDYARHFLSCCSRMLGLEYQSKRGYLGLEYYGRTIGIKIMPVGIHMNRIESVMKLADEDSKTRELTQKFAGKTVVLGVDDMDIFKGINLKLLAMEQMLKQHPKWQGKAVLIQIVNPARGKGRDLQEIEDEIKESCRRINKEYGHPGYDPIVLLDRHVPITERVAYYSIAECVAVTAVRDGMNLTPYEYVVCRQGISTSQKCLNFSGPKKSMLVISEFIGCTPSLSGAFRVNPWNVESTSEAFNEAISMADSEKQLRHEKHYRYVATHDVAYWSRSFLQDMERTCSEHFRRRCWGIGFSFGFRVVALDPNFRKLSVDAIVSSYSRADSRAILLDYDGTVMPQNSINKSPSEQVISILNTLCADAKNVVFIVSGRGRDSLSKWFHPCKKLGIAAEHGYFLRQSQNEEWKICGQNSDFGWMQIAEPVMKLYTEATDGSSIERKESALVWQYRDADPGFGSSQAKEMLDHLESVLANEPVAVKSGQFIVEVKPQGVTKGLVAEKIFSSMAEDGNLADFVLCIGDDRSDEDMFEIIGNALSSNNILSPTASVFACTVGQKPSKAKYYLDDTAEVISMLEYLAEASSPLPSSEDEEEGQNAS | 858 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
19 | 8674708 | 8677645 | - | CmaCh19G010060.1 | Cma19g01006 | 315694 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma19g01006 | 858 | TIGRFAM | T6PP: trehalose-phosphatase | 589 | 839 | IPR003337 | GO:0003824|GO:0005992 | |
Cma19g01006 | 858 | CDD | GT20_TPS | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Cma19g01006 | 858 | Gene3D | Glycogen Phosphorylase B; | 314 | 527 | - | - | |
Cma19g01006 | 858 | SUPERFAMILY | HAD-like | 590 | 839 | IPR036412 | - | |
Cma19g01006 | 858 | SUPERFAMILY | UDP-Glycosyltransferase/glycogen phosphorylase | 60 | 546 | - | - | |
Cma19g01006 | 858 | Pfam | Trehalose-phosphatase | 593 | 828 | IPR003337 | GO:0003824|GO:0005992 | |
Cma19g01006 | 858 | PANTHER | ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING), TREHALOSE-PHOSPHATASE-RELATED | 1 | 851 | - | - | |
Cma19g01006 | 858 | TIGRFAM | HAD-SF-IIB: HAD hydrolase, family IIB | 592 | 796 | IPR006379 | - | |
Cma19g01006 | 858 | CDD | HAD_TPP | 591 | 831 | - | - | |
Cma19g01006 | 858 | PANTHER | TREHALOSE-6-PHOSPHATE SYNTHASE | 1 | 851 | IPR001830 | GO:0003824|GO:0005992 | |
Cma19g01006 | 858 | Gene3D | Glycogen Phosphorylase B; | 53 | 313 | - | - | |
Cma19g01006 | 858 | Pfam | Glycosyltransferase family 20 | 60 | 543 | IPR001830 | GO:0003824|GO:0005992 | |
Cma19g01006 | 858 | Gene3D | - | 718 | 852 | IPR023214 | - | |
Cma19g01006 | 858 | Gene3D | - | 589 | 694 | IPR023214 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma11g01907 | Cma19g01006 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01269 | Cma-Chr1:9157325 | Cma19g01006 | Cma-Chr19:8674708 | 8.50E-139 | dispersed | |
Cma04g00086 | Cma-Chr4:429400 | Cma19g01006 | Cma-Chr19:8674708 | 0 | dispersed | |
Cma10g00135 | Cma-Chr10:613343 | Cma19g01006 | Cma-Chr19:8674708 | 0 | dispersed | |
Cma16g01174 | Cma-Chr16:8986427 | Cma19g01006 | Cma-Chr19:8674708 | 0 | dispersed | |
Cma11g01907 | Cma-Chr11:12613065 | Cma19g01006 | Cma-Chr19:8674708 | 0 | wgd | |
Cma18g00443 | Cma-Chr18:2444622 | Cma19g01006 | Cma-Chr19:8674708 | 4.87E-142 | wgd | |
Cma19g01006 | Cma-Chr19:8674708 | Cma03g01336 | Cma-Chr3:8580070 | 0 | wgd | |
Cma19g01006 | Cma-Chr19:8674708 | Cma07g00170 | Cma-Chr7:828739 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma19g01006 | K16055 | - | csv:101209914 | 1667.9 |