Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01009 ATGGACCGCCGTGTTCGTACAAACCCATTTGTCTCAGAGCAAGAAGATCCAGAAGCCACGTCGGACGACGGCCTACCGGAGTCACCCTCCGACGACAATGATTCAAAACCCGCCGCCGGCCCCCCTCCCAAAAAGAGTAGAAGGGGAGTTCAGAAGAGAGTAGTGTCCGTACCAATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCCAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATTACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACAATTCCTCGCCGTCCTCCGCCGCGATCGCCGCTGCACCCGACTCCTCATCCCCGGGAAGCACTACGACGTCGTCGTCAACTTCCTCCGGCGACCATACGAACACCGATCCCTCATTTCCGGCGGCGGCGAAGTTCGAGGAGGCGGCTGCGGTTTTTGCGAGTCAGCCAGAACTAGAACTCGGCGGCGACTCGCTGATGATAAAACCATGCATCGGCGATTTTGGATGGTTGGCTGACGTGGCATACGATAGAATCCTGGAGGGCCCAATTTGCGGGGGAGGCGACATATTCGACGACGCCGATGTAATGGTTTTGTCCACAAGAGGAGATGACGAGGACGAATCGTTATTTGCTGACCTTGGGGAGTTACCCGAAGGCTCTATGGTTTTCGGGCGACGGCGAGCGGTCCAACTGGACGGACCGAACCGGACATGTGGCAGAATATTAGACTGCTAG 888 56.31 MDRRVRTNPFVSEQEDPEATSDDGLPESPSDDNDSKPAAGPPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHNSSPSSAAIAAAPDSSSPGSTTTSSSTSSGDHTNTDPSFPAAAKFEEAAAVFASQPELELGGDSLMIKPCIGDFGWLADVAYDRILEGPICGGGDIFDDADVMVLSTRGDDEDESLFADLGELPEGSMVFGRRRAVQLDGPNRTCGRILDC 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8683559 8685924 - CmaCh19G010090.1 Cma19g01009 315697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01009 295 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g01009 295 Gene3D WRKY domain 62 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g01009 295 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g01009 295 PANTHER OS01G0750100 PROTEIN 20 281 - -
Cma19g01009 295 MobiDBLite consensus disorder prediction 136 183 - -
Cma19g01009 295 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma19g01009 295 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma19g01009 295 MobiDBLite consensus disorder prediction 1 114 - -
Cma19g01009 295 MobiDBLite consensus disorder prediction 146 180 - -
Cma19g01009 295 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 20 281 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma19g01009 Cma-Chr19:8683559 Cma07g00047 Cma-Chr7:284916 2.13E-35 dispersed
Cma11g01903 Cma-Chr11:12604487 Cma19g01009 Cma-Chr19:8683559 8.41E-150 wgd
Cma13g00585 Cma-Chr13:5832711 Cma19g01009 Cma-Chr19:8683559 4.69E-47 wgd
Cma18g00429 Cma-Chr18:2364208 Cma19g01009 Cma-Chr19:8683559 2.38E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36939 PF03106 WRKY 1.10E-24 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01009 - - csv:101209422 470.314