Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01015 ATGGCATCCATTATTTCTCATCTTTTCATTGCGCTTTCCCTTTTCGCCTTCTCCGCCAATGCTCAGCTCTCGCCCAGCTTCTACGCTAAAAGCTGTCCCCGACTCGGAGGAATTGTTCGTTCGGGTATGATCAAAGCCGTTAACAGAGAAAAACGTCTCGCAGCTTCGATCCTTCGTTTGTTCTTCCACGACTGCTTCGTAAATGGTTGCGATGGTTCTATATTGCTCGATGATACTCCAACGTTTACGGGCGAAAAAAATGCATTTCCAAATAGAAACTCAGCGAGAGGGTTCGAAGTGATTGACGATATTAAAACTCAGGTCGAAGCTGCTTGTAAAGCCACCGTTTCGTGTGCTGATATTCTTGCTCTTGCTACTCGCGATGGGGTCGCTTTGCTCGGAGGGCCAAGTTGGGCTGTACCACTCGGTCGAAAGGACTCGAGGACTGCGAGTGAGAGTGGAGCAAACAGCAACCTTCCCGGGCCAGGCTCCGACCTCTCGACCCTCATCTCGATGTTTGCTGCCCAAGGGCTCAATGCTCGCGATATGACAGCCCTCTCGGGCGGTCACACTATAGGTATGGCTAAATGTCAATTCTTCCGAACTCGAATCTACAACGAGACCAATATCGATCCCACCTTTGCCACCCAACGGCAAGCCAACTGTCCGTTCTCGGGCGGTGACACAAACTTAGCCCCTCTCGACTCGACCAACAATATGTTCGACAACAAGTATTTCGTAGACCTGACGAACAAGCGCGGGCTGTTTCATTCGGACCAAGTACTGTTCAACGGCGGCTCACAAGACGCGTTGGTTCGGACTTACAGTACGAGTCCCGCAACCTTTAGAGCGGATTTTGTAAGCGCCATGATCAAGATGGGGAATCTCGGCCCTCCAGCTGGAGCCGCCAGTGAGATTAGACTAAATTGCAGGGTGTGCTCTGCTATTCATCGTCGGCTACCGGAGTTTCTGCGGCGACGGCCCTGGCTTTGGAATGATCCTCTGAACCTCTTCAGGCTACACTCTGATTCTGGAATGGACTTCGATAAGGAAATGTCATCGACTATTGTAGAAAGTAAGGATGCAGTAACTGGTCACATAATCTCCACTACTATTGGAGGGGAAAATGGCGAGCCAAAACAGACTATTAGCTACATGGCGGAACGTGTTGTTGGTTCCGGATCGTTTGGAATTGTTTTCCAGGCTAAATGCTTGGAAACTGGGGAGACTTTTGCTATAAAGAAAGTCTTGCAGGACAGACGTTATAAGAATCGTGAGCTGCAGTTAATGCGCTTGATGGATCATCCAAATGTTGTTTCCTTGAAGCATTGTTTTTTTTCTACAACTAGTAAGGATGAACTCTTCTTAAATCTGGTCATGGAATACGTTCCTGAGACTATGTATCGAGTACTGAAGCACTACTGCAATATGAACCAGAGGATGCCACTCATCTATGTGAAACTTTATACTTATCAAATCTTCAGGGGACTAGCTTATATACACACTGTTCCTGGAGTTTGTCACCGCGATGTAAAGCCTCATAATATTTTGGTTGATCCTCTCGCGCATCAGGTCAAGCTTTGTGATTTTGGAAGCGCAAAAGTCCTGGTTAAAGGTGAGGCAAACATCTCTTACATATGCTCCCGTTACTATCGAGCTCCAGAGCTCATATTTGGTGCAACGGAGTACTCTACATCCATCGACATATGGTCCGCTGGTTGTGTTCTTGCCGAGCTGCTTCTAGGCCAGCCATTGTTTCCTGGGGAAAGTGCCGTAGATCAACTGGTTGAGATAATCAAGGTTCTTGGCACTCCAACTCGAGAAGAAATTCGATGCATGAATCCAAATTATACAGATTTTAGGTTTCCTCAGATCAAAGCCCATCCGTGGCACAAGGTCTTTCACAAACGAATGCCACCCGAAGCTATTGACCTTGCTTCAAGGGTTCTTCAATATTCTCCCGGCCTTAGGTCGACTGCACTTGAAGCATGTGCGCATCCCTTCTTTGATGAACTTCGGGAGCCTAATGCCCGCCTCCCCAATGGTCGTCCATTGCCCCGGCTCTTCGATTTTAAACAGGAACTTTCCGGAGCATCACCTGAATTGATAAAGAGGCTCATACCAGAGCATGTTCGGCGGCAGACTGGACTAGCGTTACCTCATCAAGCAGGTACAAACATTAACTCGAGGCCATGA 2196 47.95 MASIISHLFIALSLFAFSANAQLSPSFYAKSCPRLGGIVRSGMIKAVNREKRLAASILRLFFHDCFVNGCDGSILLDDTPTFTGEKNAFPNRNSARGFEVIDDIKTQVEAACKATVSCADILALATRDGVALLGGPSWAVPLGRKDSRTASESGANSNLPGPGSDLSTLISMFAAQGLNARDMTALSGGHTIGMAKCQFFRTRIYNETNIDPTFATQRQANCPFSGGDTNLAPLDSTNNMFDNKYFVDLTNKRGLFHSDQVLFNGGSQDALVRTYSTSPATFRADFVSAMIKMGNLGPPAGAASEIRLNCRVCSAIHRRLPEFLRRRPWLWNDPLNLFRLHSDSGMDFDKEMSSTIVESKDAVTGHIISTTIGGENGEPKQTISYMAERVVGSGSFGIVFQAKCLETGETFAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSKDELFLNLVMEYVPETMYRVLKHYCNMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPHNILVDPLAHQVKLCDFGSAKVLVKGEANISYICSRYYRAPELIFGATEYSTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPQIKAHPWHKVFHKRMPPEAIDLASRVLQYSPGLRSTALEACAHPFFDELREPNARLPNGRPLPRLFDFKQELSGASPELIKRLIPEHVRRQTGLALPHQAGTNINSRP 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8715805 8723512 - CmaCh19G010150.1 Cma19g01015 315703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01015 731 SMART serkin_6 385 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01015 731 Gene3D Transferase(Phosphotransferase) domain 1 465 712 - -
Cma19g01015 731 ProSitePatterns Protein kinases ATP-binding region signature. 391 415 IPR017441 GO:0005524
Cma19g01015 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 506 518 IPR008271 GO:0004672|GO:0006468
Cma19g01015 731 Gene3D - 27 311 - -
Cma19g01015 731 Gene3D Peroxidase, domain 2 160 293 - -
Cma19g01015 731 ProSiteProfiles Protein kinase domain profile. 385 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01015 731 CDD STKc_GSK3 380 672 IPR039192 -
Cma19g01015 731 SUPERFAMILY Heme-dependent peroxidases 22 312 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 232 247 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 248 265 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Plant peroxidase signature 288 301 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 Pfam Protein kinase domain 385 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01015 731 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Haem peroxidase superfamily signature 234 249 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PANTHER SHAGGY-RELATED PROTEIN KINASE ETA-LIKE 346 719 - -
Cma19g01015 731 SUPERFAMILY Protein kinase-like (PK-like) 384 693 IPR011009 -
Cma19g01015 731 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Cma19g01015 731 ProSiteProfiles Plant heme peroxidase family profile. 22 314 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 Gene3D Phosphorylase Kinase; domain 1 370 464 - -
Cma19g01015 731 Pfam Peroxidase 41 277 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma19g01015 731 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 346 719 - -
Cma19g01015 731 CDD secretory_peroxidase 22 312 IPR033905 GO:0004601|GO:0042744
Cma19g01015 731 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01896 Cma19g01015 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma20g00313 Cma-Chr20:1550512 Cma19g01015 Cma-Chr19:8715805 1.57E-120 dispersed
Cma20g00314 Cma-Chr20:1557538 Cma19g01015 Cma-Chr19:8715805 1.33E-116 dispersed
Cma20g00316 Cma-Chr20:1564987 Cma19g01015 Cma-Chr19:8715805 1.13E-115 dispersed
Cma11g01773 Cma-Chr11:11854472 Cma19g01015 Cma-Chr19:8715805 2.83E-50 transposed
Cma11g01896 Cma-Chr11:12570372 Cma19g01015 Cma-Chr19:8715805 0 wgd
Cma19g01015 Cma-Chr19:8715805 Cma02g00088 Cma-Chr2:439257 0 wgd
Cma19g01015 Cma-Chr19:8715805 Cma20g00210 Cma-Chr20:1003834 0 wgd
Cma19g01015 Cma-Chr19:8715805 Cma03g01327 Cma-Chr3:8543605 0 wgd
Cma19g01015 Cma-Chr19:8715805 Cma07g00180 Cma-Chr7:864574 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69350 PF00069 Pkinase 4.50E-62 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01015 K14502 - cit:102626148 731.865