Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01016 ATGGAAGTTGAAGACGATCACAGAAGAAAAGAGCTACTCGTTCTTGTGGTAATCGTTGTACTTGCTTCCCTCTCTCTCGTTTCCTTGCTCGTCGCTTTCAGCTATTACTGCTATATCAGCAACAAGGTCTCCAAGCGCCTCAAGATCCGCAAAAGGGTTGATCTTGAAGACGAAGGTAGTTTTGCAAATGTTGAAAAAAATTCCACTGAGAAAGGTCTCCAAGTGTTCACATTCAAGCAGCTTTACTCAGCGACCGGTGGTTGTAGCAAGTCAAATGTGATTGGGCATGGTAGCTTTGGGTGTGTATATCGGGGAGTCCTTAACGATGGGAGAAAGGTTGCGATTAAGCTTATGGATCAAGCGGGGAAGCAGGGAGAGGAGGAATTTAAAGTGGAGGTGGACGTGTTAAGTCGGCTTCATTCGCCATATTTGTTGGCATTGCTTGGGTATTGCTCAGATAACAATCATAAAGTGCTGGTTTACGAGTTCATGGTGAATGGCGGTCTGCAGGAACATTTATACCCTGTTAGGAGATCAAATTCCGTCAGCGTTAAGTTGGACTGGGAAACACGGCTGAGAGTTTCTCTGGAAGCTGCCAAAGGTTTGGAGTATTTACATGATCATGTAAGCCCCCCTGTAATTCATAGGGATTTCAAGAGTAGCAATGTCCTGCTGGACAAAGATCTTCATGCTAAGGTTGCTGATTTTGGATTGGCAAAGATCGGCTCAGACAAAGCCGGTGGTCACGTCTCCACTCGAGTATTGGGGACACAAGGATATGTTGCCCCAGAGTATGCTCTAACCGGGCATTTAACAACTAAGTCAGATGTCTATAGTTATGGGGTTGTCCTCTTGGAGCTGCTCACAGGCAGAGTGCCAGTTGATATAAAGAGAGCTCCTGGGGAAGCTTCCCTTGTTTCTTGGGCTCTGCCGAGGCTGACTGATAGGGAGGGAGTGATGCATATAATGGACCCTGCATTGGAGGGTCAGTACTCCATGAAGGACGTTGTTCAAGTAGCCGCAATCGCAGCAATGTGTGTTCAACCGGAGGCGGATTACAGGCCGCTGATGGTCGATGTCGTCCAATCACTGGTTCCACTGGTGAGAAGTTACCGGACAACTTCAAAGATCGGTAGCAGTTCGAGTTCCAGCGCTTCCAAGTCCCCTACAGCGCACGACAAGGCTAGTTCAAGAGATTGA 1200 47.58 MEVEDDHRRKELLVLVVIVVLASLSLVSLLVAFSYYCYISNKVSKRLKIRKRVDLEDEGSFANVEKNSTEKGLQVFTFKQLYSATGGCSKSNVIGHGSFGCVYRGVLNDGRKVAIKLMDQAGKQGEEEFKVEVDVLSRLHSPYLLALLGYCSDNNHKVLVYEFMVNGGLQEHLYPVRRSNSVSVKLDWETRLRVSLEAAKGLEYLHDHVSPPVIHRDFKSSNVLLDKDLHAKVADFGLAKIGSDKAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDIKRAPGEASLVSWALPRLTDREGVMHIMDPALEGQYSMKDVVQVAAIAAMCVQPEADYRPLMVDVVQSLVPLVRSYRTTSKIGSSSSSSASKSPTAHDKASSRD 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8728616 8731846 - CmaCh19G010160.1 Cma19g01016 315704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01016 399 MobiDBLite consensus disorder prediction 375 399 - -
Cma19g01016 399 Gene3D Transferase(Phosphotransferase) domain 1 164 387 - -
Cma19g01016 399 MobiDBLite consensus disorder prediction 375 391 - -
Cma19g01016 399 ProSitePatterns Protein kinases ATP-binding region signature. 94 116 IPR017441 GO:0005524
Cma19g01016 399 PANTHER OS01G0750732 PROTEIN 4 396 - -
Cma19g01016 399 CDD STKc_IRAK 94 367 - -
Cma19g01016 399 Gene3D Phosphorylase Kinase; domain 1 51 163 - -
Cma19g01016 399 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Cma19g01016 399 ProSiteProfiles Protein kinase domain profile. 88 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma19g01016 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cma19g01016 399 SUPERFAMILY Protein kinase-like (PK-like) 67 364 IPR011009 -
Cma19g01016 399 PANTHER OS07G0227300 PROTEIN 4 396 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01895 Cma19g01016 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01121 Cma-Chr11:6304589 Cma19g01016 Cma-Chr19:8728616 2.94E-140 dispersed
Cma19g01016 Cma-Chr19:8728616 Cma04g00953 Cma-Chr4:4887290 5.25E-105 dispersed
Cma11g01895 Cma-Chr11:12565768 Cma19g01016 Cma-Chr19:8728616 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69351 PF00069 Pkinase 2.40E-43 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01016 - - csv:101204636 680.248