Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma19g01021 ATGATTTCATTGAGGAATTTGATGGAAGAGAAACAGCTGGATTTGAATCAACCTCTTCTTTCTGTGAGGCGTTTTACATCCACAGGAACATCATCCAAGACTAATGAAAAAGCCAGACCCGAACCCGAAATTCCTCGTCCTCCGGTATATAAATCAGAATTGAAATCTGGTCCAGTGAGGAATCCTGGAACTGTTCCTTTTGTATGGGAGCAAACTCCAGGAAAACCCAAGGATGAAAGCACTGTGAAAACTCAGATTTCCAAACGGCCTCCACTTGTCCCAAAACTCCCACCTGGAAGAGCCCAAAAAATGAATCAAGAAGTTCCTACTTCTATAAATGCTTCATTAGATGAAAATGTCAGAGAAACAGTTGAAGAGATGACCAGTTGTAAGTCAGGAAATGATGACGAAGAAGAAGATGATGAGGTTTACAGGGATGCAAACGATATATTTTCTCGATCCGAATCGTTCTTCTTGAATTGTAGTATTAGTGGAGTGAGTGGATTGGATGATTCTGAAATTAAACCTTCAGGAGTCTCTTCCATGGATCCACATTCTCGGGATTTCATGATGGACCGGTTTCTACCTGCAGCAAAGGCAATGGCATCAGAAACACCTCCACATACTATTAGAAAACAAACTGTCGAGCGACCGAGGGAAATAAAATTGGTGATGAATGGGGATAGGCAGAGTCGGACAAACCTGCACGTTCAGACACAACATGTAAAAGAAATATTCAGGGAAGAAAGTGATGGTGAAGATGATGATTTTGATGAGTCTGGATATGCTTCCACTCGGGGATGTGGTTTTCTTCCTCGGTTTTGCTTAAAAGGTTCACTTGTTCTTGTAAATCCAGTACCTGGAATGAGAATGCAGGCCACTTCGGTGCGCCGAGTTCGTAATAGCTCAACTGGGAGTTCCAAGGATGCTGTAAATGAGAGACGATCAAGTCATGGTCAAGGAATAACTCGGCAGAAGCTCGAAGAAAATGCAAGTAATATTCAGGAGATCGATACATTTTCTTTATACAGACATTTGCAGGGCGAGGGCATATCCAAATACCCAAATGAACCTTCCCAGGCTGTTCATGGAAATGTAAATCCTTCTCTTGGTTATACTGTAAAGGCTACCGATTCTGTGACGAATGAATACGATGAACCATGTCGAAGAAGCCTAAATAGCTTTCATGCATTACTGGGTGACGAGTCGGGTTCAGCTAGTCCTGTAGAGAAAACTCTGTACATAGATTCTGTTCATAAAATTACATCTCCTGACTCAAGTTCAAATTCTTTGGATAGGAAGGGGATAAGTTACAATGGAGATATAATTGATGATGCTTCGATAAAAAGCACCGAAATTAAAGAACTGTGTAAACTGGATTCTGCAACCCAAGATGTCAAGAATTTGAATGCTGTTGGTGAAAAAAATACTCTGAGACCTGACAGTTTGAAATCTATGGATTCTTGCTTGCTCACTTGCTCGAATAGATCATTGTTTGAGGTAAAAGTGGATTCAAATTTCTCCAGGCTCAAACCAGAACATACTCAGGATGCTGCAAAGTCGACAAGCTCACAATTCATTAACAACAAGAAGTTTAATCTGGAAAACCAATTTCCCTTGAAGCCGAGCAGCCGAGGTGATGTGAATGGTCTTGCTAAAGATAACACTACATTGGTATCCTCATATGGAATTCAGAGTGAGAAGGTTAATTTAGACAAGAAACAACCTGAGAAGTCTATTTATGGAAGGAATAGCGTAATTGTTCCAGAATATGCCAAGAAGCACGAGTCTGATGGCGAAAAGCTTTCTCCTGTTGAGGACTCCCCTGGTCTGAGAACTTCAGAACGTGCTACCAATGGAGAGAAGGATTCAAGAAATCAACTTCTCAAGAGGGTAGGTAATGAAGATGGTTCTCGCGGTGGCTACTCACAGTCACGGCTGCGTTTTGCTCCGCCTCCGCCAAAATCTCCATCAGAATCTTGGTTGAAACGTACTTTGCCGACTTCTTCAAGAAACACAGTTTTTTTGCAATCTTCTTTTGCAATGCAGGTTAACCCTGTTTCCACGACCGCGTCTCCGGATCGAAAGACACCATCTACTGTTAAAAGCTCTGATACATACCATCTGCATCTTCAGTTTTCAAAGGAACTGCTGTCATCTATACCTGAAGTTTAG 2175 41.7 MISLRNLMEEKQLDLNQPLLSVRRFTSTGTSSKTNEKARPEPEIPRPPVYKSELKSGPVRNPGTVPFVWEQTPGKPKDESTVKTQISKRPPLVPKLPPGRAQKMNQEVPTSINASLDENVRETVEEMTSCKSGNDDEEEDDEVYRDANDIFSRSESFFLNCSISGVSGLDDSEIKPSGVSSMDPHSRDFMMDRFLPAAKAMASETPPHTIRKQTVERPREIKLVMNGDRQSRTNLHVQTQHVKEIFREESDGEDDDFDESGYASTRGCGFLPRFCLKGSLVLVNPVPGMRMQATSVRRVRNSSTGSSKDAVNERRSSHGQGITRQKLEENASNIQEIDTFSLYRHLQGEGISKYPNEPSQAVHGNVNPSLGYTVKATDSVTNEYDEPCRRSLNSFHALLGDESGSASPVEKTLYIDSVHKITSPDSSSNSLDRKGISYNGDIIDDASIKSTEIKELCKLDSATQDVKNLNAVGEKNTLRPDSLKSMDSCLLTCSNRSLFEVKVDSNFSRLKPEHTQDAAKSTSSQFINNKKFNLENQFPLKPSSRGDVNGLAKDNTTLVSSYGIQSEKVNLDKKQPEKSIYGRNSVIVPEYAKKHESDGEKLSPVEDSPGLRTSERATNGEKDSRNQLLKRVGNEDGSRGGYSQSRLRFAPPPPKSPSESWLKRTLPTSSRNTVFLQSSFAMQVNPVSTTASPDRKTPSTVKSSDTYHLHLQFSKELLSSIPEV 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 8753334 8756822 + CmaCh19G010210.1 Cma19g01021 315709
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma19g01021 724 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 8 720 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 294 330 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 295 310 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 616 632 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 591 662 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 104 118 - -
Cma19g01021 724 Pfam Protein of unknown function (DUF688) 8 434 IPR007789 -
Cma19g01021 724 PANTHER N-METHYLTRANSFERASE, PUTATIVE (DUF688)-RELATED 8 720 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 591 605 - -
Cma19g01021 724 MobiDBLite consensus disorder prediction 23 141 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma11g01805 Cma19g01021 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01892 Cma-Chr11:12532329 Cma19g01021 Cma-Chr19:8753334 3.28E-36 wgd
Cma13g00601 Cma-Chr13:5894748 Cma19g01021 Cma-Chr19:8753334 5.25E-40 wgd
Cma18g00418 Cma-Chr18:2285939 Cma19g01021 Cma-Chr19:8753334 2.20E-40 wgd
Cma19g01021 Cma-Chr19:8753334 Cma20g00214 Cma-Chr20:1023523 7.90E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma19g01021 - - csv:101218044 1085.48